COPG1_ORYSJ
ID COPG1_ORYSJ Reviewed; 884 AA.
AC Q8H852; Q10PP1;
DT 01-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2007, sequence version 2.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=Coatomer subunit gamma-1;
DE AltName: Full=Gamma-1-coat protein;
DE Short=Gamma-1-COP;
GN OrderedLocusNames=Os03g0227000, LOC_Os03g12590; ORFNames=OJ1626B05.5;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: The coatomer is a cytosolic protein complex that binds to
CC dilysine motifs and reversibly associates with Golgi non-clathrin-
CC coated vesicles, which further mediate biosynthetic protein transport
CC from the ER, via the Golgi up to the trans Golgi network. Coatomer
CC complex is required for budding from Golgi membranes, and is essential
CC for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
CC (By similarity). {ECO:0000250}.
CC -!- SUBUNIT: Oligomeric complex that consists of at least the alpha, beta,
CC beta', gamma, delta, epsilon and zeta subunits. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Golgi apparatus membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC side {ECO:0000250}. Cytoplasmic vesicle, COPI-coated vesicle membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC side {ECO:0000250}. Note=The coatomer is cytoplasmic or polymerized on
CC the cytoplasmic side of the Golgi, as well as on the vesicles/buds
CC originating from it. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the COPG family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAN60990.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=ABF94752.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=BAF11357.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AC104473; AAN60990.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000009; ABF94752.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP008209; BAF11357.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AK068454; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015631919.1; XM_015776433.1.
DR AlphaFoldDB; Q8H852; -.
DR SMR; Q8H852; -.
DR BioGRID; 801166; 1.
DR STRING; 4530.OS03T0227000-01; -.
DR PaxDb; Q8H852; -.
DR PRIDE; Q8H852; -.
DR GeneID; 4332129; -.
DR KEGG; osa:4332129; -.
DR eggNOG; KOG1078; Eukaryota.
DR InParanoid; Q8H852; -.
DR OrthoDB; 255234at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q8H852; OS.
DR GO; GO:0030126; C:COPI vesicle coat; IBA:GO_Central.
DR GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR GO; GO:0005793; C:endoplasmic reticulum-Golgi intermediate compartment; IBA:GO_Central.
DR GO; GO:0000139; C:Golgi membrane; IBA:GO_Central.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR GO; GO:0006888; P:endoplasmic reticulum to Golgi vesicle-mediated transport; IBA:GO_Central.
DR GO; GO:0006891; P:intra-Golgi vesicle-mediated transport; IBA:GO_Central.
DR GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
DR GO; GO:0009306; P:protein secretion; IBA:GO_Central.
DR Gene3D; 1.25.10.10; -; 1.
DR Gene3D; 2.60.40.1480; -; 1.
DR Gene3D; 3.30.310.10; -; 1.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR002553; Clathrin/coatomer_adapt-like_N.
DR InterPro; IPR013041; Clathrin_app_Ig-like_sf.
DR InterPro; IPR009028; Coatomer/calthrin_app_sub_C.
DR InterPro; IPR032154; Coatomer_g_Cpla.
DR InterPro; IPR017106; Coatomer_gsu.
DR InterPro; IPR013040; Coatomer_gsu_app_Ig-like_dom.
DR InterPro; IPR037067; Coatomer_gsu_app_sf.
DR InterPro; IPR012295; TBP_dom_sf.
DR PANTHER; PTHR10261; PTHR10261; 1.
DR Pfam; PF01602; Adaptin_N; 1.
DR Pfam; PF16381; Coatomer_g_Cpla; 1.
DR Pfam; PF08752; COP-gamma_platf; 1.
DR PIRSF; PIRSF037093; Coatomer_gamma_subunit; 1.
DR SUPFAM; SSF48371; SSF48371; 1.
DR SUPFAM; SSF49348; SSF49348; 1.
DR SUPFAM; SSF55711; SSF55711; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Cytoplasmic vesicle; ER-Golgi transport; Golgi apparatus;
KW Membrane; Protein transport; Reference proteome; Repeat; Transport.
FT CHAIN 1..884
FT /note="Coatomer subunit gamma-1"
FT /id="PRO_0000285628"
FT REPEAT 65..100
FT /note="HEAT 1"
FT REPEAT 101..138
FT /note="HEAT 2"
FT REPEAT 286..323
FT /note="HEAT 3"
FT REPEAT 325..357
FT /note="HEAT 4"
FT REPEAT 358..395
FT /note="HEAT 5"
FT REGION 592..612
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 884 AA; 98606 MW; 260EBF1ADA03B30C CRC64;
MAQPYMKKDD DDEDVEYSPF YGIEKGAVLQ EARAFHDPQL DARKCSQVIT KLLYLLNQGE
TFTKVEATEV FFAVTKLFQS KDAGLRRLVY LMIKELSPSS DEVIIVTSSL MKDMNSKTDM
YRANAIRVLC RIIDGTLLTQ IERYLKQAIV DKNPVVASAA LVSGIHLLQA NPEIVKRWSN
EVQEAVQSRF ALVQFHGLAL LHQIRQNDRL AISKMVSGLT RGSVRSPLAQ CLLIRYTSQV
IRESSMNTQT SDRPFFDYLE SCLRHKSEMV ILEAARKIAE MDVTSRELAP AITVLQLFLS
SSKPVLRFAA VRTLNKVAMT RPLAVTNCNV DLESLMSDQN RSIATLAITT LLKTGNESSV
DRLMKQITNF MSDIADEFKI VVVEAIRSLC LKFPLKYRSM MNFLSNSLRE EGGFEYKKAI
VDSIVTLISE IPDAKEIGLL YLCEFIEDCE FTYLSSQILH LLGNEGPRTS DPSRYIRYIY
NRVILENATV RASAVSTLAK FGALVDALKP RIFVLLRRCL FDTDDEVRDR ATLYLQTLDG
EVAVGSTEKD VKEFLFGSFD VPLANLEASL KTYEPSEEPF DISLVSREVK SQPLQEKKAP
GKKPPAGAPA PAPVPAVDAY QKILSSIPEF SGFGRLFKSS EPVELTEAET EYAINVVKHI
YSSHVVLQYN CTNTIPEQLL ENVTVYVDAT DAEEFSEVCS KPLRSLPYDS PGQIFVAFEK
PEHVPATGKF SNVLKFIVKE VDTSTGEVDE DGVEDEYQIE DLEIVSADYM LRVAVSNFRN
AWENMDPESE RVDEYGLGVR ESLAEAVSAV ISILGMQPCE GTEVVPKNAR SHTCLLSGVF
IGDAKVLVRL SFGLSGPKEV AMKLAVRSDD PEVSDKIHEI VASG
