COPD3_ORYSJ
ID COPD3_ORYSJ Reviewed; 518 AA.
AC P49661; B7EGT8; Q0JHZ9; Q40660; Q7F004;
DT 01-FEB-1996, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1997, sequence version 2.
DT 03-AUG-2022, entry version 133.
DE RecName: Full=Coatomer subunit delta-3;
DE AltName: Full=Delta-coat protein 3;
DE Short=Archain;
DE Short=Delta-COP 3;
GN OrderedLocusNames=Os01g0833700, LOC_Os01g61710; ORFNames=P0460C04.25;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC TISSUE=Callus;
RA Tunnacliffe A.;
RL Submitted (MAY-1996) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 1-54.
RC STRAIN=cv. Nipponbare; TISSUE=Callus;
RA Minobe Y., Sasaki T.;
RL Submitted (NOV-1993) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: The coatomer is a cytosolic protein complex that binds to
CC dilysine motifs and reversibly associates with Golgi non-clathrin-
CC coated vesicles, which further mediate biosynthetic protein transport
CC from the ER, via the Golgi up to the trans Golgi network. Coatomer
CC complex is required for budding from Golgi membranes, and is essential
CC for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
CC (By similarity). {ECO:0000250}.
CC -!- SUBUNIT: Oligomeric complex that consists of at least the alpha, beta,
CC beta', gamma, delta, epsilon and zeta subunits. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Golgi apparatus membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC side {ECO:0000250}. Cytoplasmic vesicle, COPI-coated vesicle membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC side {ECO:0000250}. Note=The coatomer is cytoplasmic or polymerized on
CC the cytoplasmic side of the Golgi, as well as on the vesicles/buds
CC originating from it. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the adaptor complexes medium subunit family.
CC Delta-COP subfamily. {ECO:0000305}.
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DR EMBL; Z67962; CAA91901.1; -; mRNA.
DR EMBL; AP004366; BAB92924.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06629.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS75078.1; -; Genomic_DNA.
DR EMBL; AK069745; BAG91585.1; -; mRNA.
DR EMBL; D22365; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T03598; T03598.
DR RefSeq; XP_015650898.1; XM_015795412.1.
DR RefSeq; XP_015650902.1; XM_015795416.1.
DR AlphaFoldDB; P49661; -.
DR SMR; P49661; -.
DR IntAct; P49661; 1.
DR STRING; 4530.OS01T0833700-01; -.
DR PaxDb; P49661; -.
DR PRIDE; P49661; -.
DR EnsemblPlants; Os01t0833700-01; Os01t0833700-01; Os01g0833700.
DR GeneID; 4327409; -.
DR Gramene; Os01t0833700-01; Os01t0833700-01; Os01g0833700.
DR KEGG; osa:4327409; -.
DR eggNOG; KOG2635; Eukaryota.
DR HOGENOM; CLU_019988_3_0_1; -.
DR InParanoid; P49661; -.
DR OMA; WRIQELD; -.
DR OrthoDB; 1027200at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; P49661; OS.
DR GO; GO:0030126; C:COPI vesicle coat; IBA:GO_Central.
DR GO; GO:0005737; C:cytoplasm; ISS:Gramene.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005798; C:Golgi-associated vesicle; ISS:Gramene.
DR GO; GO:0006888; P:endoplasmic reticulum to Golgi vesicle-mediated transport; IBA:GO_Central.
DR GO; GO:0051645; P:Golgi localization; IBA:GO_Central.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR GO; GO:0006890; P:retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; IBA:GO_Central.
DR InterPro; IPR036168; AP2_Mu_C_sf.
DR InterPro; IPR027059; Coatomer_dsu.
DR InterPro; IPR011012; Longin-like_dom_sf.
DR InterPro; IPR028565; MHD.
DR PANTHER; PTHR10121; PTHR10121; 1.
DR Pfam; PF00928; Adap_comp_sub; 1.
DR SUPFAM; SSF49447; SSF49447; 1.
DR SUPFAM; SSF64356; SSF64356; 1.
DR PROSITE; PS51072; MHD; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Cytoplasmic vesicle; ER-Golgi transport; Golgi apparatus;
KW Membrane; Protein transport; Reference proteome; Transport.
FT CHAIN 1..518
FT /note="Coatomer subunit delta-3"
FT /id="PRO_0000193847"
FT DOMAIN 277..518
FT /note="MHD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00404"
FT REGION 165..235
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 165..179
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 35
FT /note="A -> E (in Ref. 7; D22365)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 518 AA; 57270 MW; DE2FE8ABEE665EA5 CRC64;
MVVLAASIIS KSGKALVSRQ FVDMSRIRID GLLAAFPKLV GSGKQHTYVE TENVRYVYQP
IEALYLLLIT NKQSNILEDL DTLRLLSKLI PEYAPSLDEE GVCKAAFELL FAFIEAISLG
NKENVTVAQV KQYCEMESHE EKLHKLVMQS KINETKDVMR RKVTEIEKSK TDRGKPDKGG
FGSLRTPNSF SDMGIRGGGP GGDPIFGDMD SFTHKAKGRP SAPAPASAST KVPGGMKLSK
AQKTNQFLES LKAEGEVILE DTQPSATQSR SSYIPPSDPI TVTIEEKLNV TVKRDGGVSN
FDIQGTLALQ ILNDTDGFIQ LQIENQDVPG LNFKTHPNIN KELFNSQQIV GAKDPNRPFP
SGQNETPLVK WRIQELNESS LPLAVNCWPS VSGNETYVNI EYEASEMFDL HNVVISIPLP
ALREAPGVRQ IDGEWRYDSR NSVLEWSIIL VDQSNRSGSL EFTVPAADPS TFFPISVGFS
ASNTFSDLKV TAIRPLREGS PPKFSQRNRL VTYNYQVV
