COPD1_ORYSJ
ID COPD1_ORYSJ Reviewed; 524 AA.
AC Q0DJA0; A0A0P0WKL6;
DT 01-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Coatomer subunit delta-1;
DE AltName: Full=Delta-coat protein 1;
DE Short=Delta-COP 1;
GN OrderedLocusNames=Os05g0310800, LOC_Os05g24594;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: The coatomer is a cytosolic protein complex that binds to
CC dilysine motifs and reversibly associates with Golgi non-clathrin-
CC coated vesicles, which further mediate biosynthetic protein transport
CC from the ER, via the Golgi up to the trans Golgi network. Coatomer
CC complex is required for budding from Golgi membranes, and is essential
CC for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
CC (By similarity). {ECO:0000250}.
CC -!- SUBUNIT: Oligomeric complex that consists of at least the alpha, beta,
CC beta', gamma, delta, epsilon and zeta subunits. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Golgi apparatus membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC side {ECO:0000250}. Cytoplasmic vesicle, COPI-coated vesicle membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC side {ECO:0000250}. Note=The coatomer is cytoplasmic or polymerized on
CC the cytoplasmic side of the Golgi, as well as on the vesicles/buds
CC originating from it. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the adaptor complexes medium subunit family.
CC Delta-COP subfamily. {ECO:0000305}.
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DR EMBL; AP008211; BAF17073.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS93284.1; -; Genomic_DNA.
DR EMBL; AK068582; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015639677.1; XM_015784191.1.
DR AlphaFoldDB; Q0DJA0; -.
DR SMR; Q0DJA0; -.
DR STRING; 4530.OS05T0310800-01; -.
DR PaxDb; Q0DJA0; -.
DR PRIDE; Q0DJA0; -.
DR EnsemblPlants; Os05t0310800-01; Os05t0310800-01; Os05g0310800.
DR GeneID; 4338375; -.
DR Gramene; Os05t0310800-01; Os05t0310800-01; Os05g0310800.
DR KEGG; osa:4338375; -.
DR eggNOG; KOG2635; Eukaryota.
DR HOGENOM; CLU_019988_3_0_1; -.
DR InParanoid; Q0DJA0; -.
DR OMA; YDARKHV; -.
DR OrthoDB; 1027200at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q0DJA0; OS.
DR GO; GO:0030126; C:COPI vesicle coat; IBA:GO_Central.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0006888; P:endoplasmic reticulum to Golgi vesicle-mediated transport; IBA:GO_Central.
DR GO; GO:0051645; P:Golgi localization; IBA:GO_Central.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR GO; GO:0006890; P:retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; IBA:GO_Central.
DR InterPro; IPR036168; AP2_Mu_C_sf.
DR InterPro; IPR027059; Coatomer_dsu.
DR InterPro; IPR011012; Longin-like_dom_sf.
DR InterPro; IPR028565; MHD.
DR PANTHER; PTHR10121; PTHR10121; 1.
DR Pfam; PF00928; Adap_comp_sub; 1.
DR SUPFAM; SSF49447; SSF49447; 1.
DR SUPFAM; SSF64356; SSF64356; 1.
DR PROSITE; PS51072; MHD; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Cytoplasmic vesicle; ER-Golgi transport; Golgi apparatus;
KW Membrane; Protein transport; Reference proteome; Transport.
FT CHAIN 1..524
FT /note="Coatomer subunit delta-1"
FT /id="PRO_0000285621"
FT DOMAIN 283..524
FT /note="MHD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00404"
FT REGION 215..244
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 74
FT /note="S -> G (in Ref. 4; AK068582)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 524 AA; 57506 MW; 61F249C895A54D38 CRC64;
MVVLAASIIS KSGKALVSRQ FVDMSRIRIE GLLAAFPKLV GTGKQHTYVE TENVRYVYQP
IEGLYLLLIT NKQSNILEDL DTLRLLSKLV PEYSPSLDEE GVCKTAFELI FAFDEAISLG
NKENVTVQQV KQYCEMESHE EKAHKLMMQS KINETRDVMK KKASELDKMR MERGKLDKGG
YSSISGPRVI EKTFNDMSIT GSGFGSGSGL GGLGMDMDSF ASKPKGGRPS AAATAPGKGL
GMKLGKTQKT NQFLESLKAE GEVILEDVQP SSVQSRASPL PPSDPVTVTI EEKLNVTVKR
DGGVNNFDVQ GTLALQVLND ADGFIQLQIE NQDVPGLSFK THPNINKDLF NSQQVVGAKD
PNRPFPSGQN ETPLVKWRIQ GMDESSLPLS VNCWPSVSGS ETYVNIEYEA AEMFDLHNVV
ISIPLPALRE APSVRQIDGE WKYDSRNSVL EWSILLIDQS NRSGSMEFVV PPADPSTFFP
ISIGFSASST FSDLKVTGIR PLKDGNPPKY SQRARLVAAN YQVV
