ID   COPB2_ORYSJ             Reviewed;         950 AA.
AC   Q0JNK5; A0A0P0V121; Q9FTP5;
DT   01-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT   03-OCT-2006, sequence version 1.
DT   03-AUG-2022, entry version 101.
DE   RecName: Full=Coatomer subunit beta-2;
DE   AltName: Full=Beta-coat protein 2;
DE            Short=Beta-COP 2;
GN   OrderedLocusNames=Os01g0281400, LOC_Os01g17430;
GN   ORFNames=OsJ_001282, OSJNBa0036E02.23;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12447438; DOI=10.1038/nature01184;
RA   Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA   Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA   Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA   Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA   Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA   Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA   Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA   Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA   Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA   Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA   Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA   Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA   Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT   "The genome sequence and structure of rice chromosome 1.";
RL   Nature 420:312-316(2002).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
CC   -!- FUNCTION: The coatomer is a cytosolic protein complex that binds to
CC       dilysine motifs and reversibly associates with Golgi non-clathrin-
CC       coated vesicles, which further mediate biosynthetic protein transport
CC       from the ER, via the Golgi up to the trans Golgi network. Coatomer
CC       complex is required for budding from Golgi membranes, and is essential
CC       for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
CC       (By similarity). {ECO:0000250}.
CC   -!- SUBUNIT: Oligomeric complex that consists of at least the alpha, beta,
CC       beta', gamma, delta, epsilon and zeta subunits. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Golgi apparatus membrane
CC       {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC       side {ECO:0000250}. Cytoplasmic vesicle, COPI-coated vesicle membrane
CC       {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC       side {ECO:0000250}. Note=The coatomer is cytoplasmic or polymerized on
CC       the cytoplasmic side of the Golgi, as well as on the vesicles/buds
CC       originating from it. {ECO:0000250}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAB17749.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=BAF04673.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AP002862; BAB17749.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP008207; BAF04673.2; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP014957; BAS71602.1; -; Genomic_DNA.
DR   EMBL; CM000138; EAZ11457.1; -; Genomic_DNA.
DR   RefSeq; XP_015615004.1; XM_015759518.1.
DR   AlphaFoldDB; Q0JNK5; -.
DR   SMR; Q0JNK5; -.
DR   STRING; 4530.OS01T0281400-00; -.
DR   PaxDb; Q0JNK5; -.
DR   PRIDE; Q0JNK5; -.
DR   EnsemblPlants; Os01t0281400-00; Os01t0281400-00; Os01g0281400.
DR   GeneID; 4326915; -.
DR   Gramene; Os01t0281400-00; Os01t0281400-00; Os01g0281400.
DR   KEGG; osa:4326915; -.
DR   eggNOG; KOG1058; Eukaryota.
DR   HOGENOM; CLU_006949_0_0_1; -.
DR   InParanoid; Q0JNK5; -.
DR   OMA; LHHPNEY; -.
DR   OrthoDB; 195812at2759; -.
DR   Proteomes; UP000000763; Chromosome 1.
DR   Proteomes; UP000007752; Chromosome 1.
DR   Proteomes; UP000059680; Chromosome 1.
DR   Genevisible; Q0JNK5; OS.
DR   GO; GO:0030126; C:COPI vesicle coat; IBA:GO_Central.
DR   GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   GO; GO:0006888; P:endoplasmic reticulum to Golgi vesicle-mediated transport; IBA:GO_Central.
DR   GO; GO:0006891; P:intra-Golgi vesicle-mediated transport; IBA:GO_Central.
DR   GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
DR   Gene3D; 1.25.10.10; -; 1.
DR   InterPro; IPR011989; ARM-like.
DR   InterPro; IPR016024; ARM-type_fold.
DR   InterPro; IPR002553; Clathrin/coatomer_adapt-like_N.
DR   InterPro; IPR011710; Coatomer_bsu_C.
DR   InterPro; IPR016460; COPB1.
DR   InterPro; IPR029446; COPB1_appendage_platform_dom.
DR   PANTHER; PTHR10635; PTHR10635; 1.
DR   Pfam; PF01602; Adaptin_N; 1.
DR   Pfam; PF07718; Coatamer_beta_C; 1.
DR   Pfam; PF14806; Coatomer_b_Cpla; 1.
DR   PIRSF; PIRSF005727; Coatomer_beta_subunit; 1.
DR   SUPFAM; SSF48371; SSF48371; 1.
PE   3: Inferred from homology;
KW   Cytoplasm; Cytoplasmic vesicle; ER-Golgi transport; Golgi apparatus;
KW   Membrane; Protein transport; Reference proteome; Repeat; Transport.
FT   CHAIN           1..950
FT                   /note="Coatomer subunit beta-2"
FT                   /id="PRO_0000285619"
FT   REPEAT          92..126
FT                   /note="HEAT 1"
FT   REPEAT          127..164
FT                   /note="HEAT 2"
FT   REPEAT          275..312
FT                   /note="HEAT 3"
FT   REPEAT          313..350
FT                   /note="HEAT 4"
FT   REPEAT          392..429
FT                   /note="HEAT 5"
SQ   SEQUENCE   950 AA;  105221 MW;  A25F0E3120F9B573 CRC64;
     MEKPSTLLVH FDKGSAAMAG EIKADLEGSD VAAKVDAMKR AVMLLLNGET LPTLFITVVR
     YVLPSEDHTI QKLLLLYLEI IDKRDAAGRG LPEMILICQN LRNNLHHPNE YIRGVTLRFL
     CRLSEPEVLE PLVPSILENL DHRHHFIRRH ALSAISSIYR LPHGDQLVPD APELVERALA
     SEQDASARRN AFLMLCTCAQ ERAVAYLLSN ADRVAEWPDL LQMAAVDLIR KVCRSPNRAD
     KGRYIKIIIA LLSSPSTAVV YECAGALVSL SSAPTAVRAA ANTYCELLSS QSDNNVKLIV
     LDRLNELRTS HRDVMVDVVM DVLRALASPN LDVKRKVLDL VLDLLTARNV EEVVLYLKKE
     VVKTQAGELE KSGEYRQMLV QAIHACAVEY PEVAGSVVHL LMDFLGDTNV AAAVDVVLFV
     REIIETNPKL RVSMIQRLID TFYQIRASRV CSCALWILGE YSLSLSEVEN AISTIKQCLG
     DVPFYTVSEE GEATDSAKPA QPVVNSVTVS SRRPVVLADG TYATQSAATE AISTPSVAPG
     SLSSTLNLRS LILSGDFFLA AVISCTLTKL VLRLEEVQPS MVEVNKACTG ALLVMTSILQ
     LGQSSYLPHP IDNDSYDRIV LCVRLLCNTG DDVRKVWLQS CRQSFAKMLA EKQFRETEEM
     KAKAQISHAQ PDDLIDFYHL KSRRGMSQLE LEDEVQDDLK AATGGFTKDA YDANRLNRIL
     QLTGFSDPVY AEAYVTVHHY DIVLDVTIIN RTKETLQNLC LELATMGDLK LVDRPQNYTL
     APESSKQIRA NIKVSSTETG VIFGNIVYET SNVMERSVVV LNDIHIDIMD YISPATCADV
     TFRNMWAEFE WENKVAVNTV IQNEKEFLDH IIKSTNMKCL TPPSALDGEC GFLAANLYAK
     SVFGEDALVN ISIEKQFDGK LSGYIRIRSK TQGIALSLGD KITLKQKGGS