YNCD_ECOLI
ID YNCD_ECOLI Reviewed; 700 AA.
AC P76115; Q2MBB2;
DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1997, sequence version 1.
DT 03-AUG-2022, entry version 155.
DE RecName: Full=Probable TonB-dependent receptor YncD;
DE Flags: Precursor;
GN Name=yncD; OrderedLocusNames=b1451, JW1446;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
CC -!- FUNCTION: Probable receptor, TonB-dependent.
CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000305}; Peripheral
CC membrane protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the TonB-dependent receptor family.
CC {ECO:0000305}.
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DR EMBL; U00096; AAC74533.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE76444.1; -; Genomic_DNA.
DR PIR; F64897; F64897.
DR RefSeq; NP_415968.1; NC_000913.3.
DR RefSeq; WP_000689363.1; NZ_LN832404.1.
DR PDB; 6V81; X-ray; 2.96 A; A=1-700.
DR PDBsum; 6V81; -.
DR AlphaFoldDB; P76115; -.
DR SMR; P76115; -.
DR BioGRID; 4260197; 177.
DR ComplexPortal; CPX-3585; Uncharacterized yncD-DHBS outer membrane transporter complex.
DR DIP; DIP-12750N; -.
DR IntAct; P76115; 3.
DR STRING; 511145.b1451; -.
DR TCDB; 1.B.14.9.5; the outer membrane receptor (omr) family.
DR TCDB; 1.B.22.1.3; the outer bacterial membrane secretin (secretin) family.
DR PaxDb; P76115; -.
DR PRIDE; P76115; -.
DR EnsemblBacteria; AAC74533; AAC74533; b1451.
DR EnsemblBacteria; BAE76444; BAE76444; BAE76444.
DR GeneID; 946015; -.
DR KEGG; ecj:JW1446; -.
DR KEGG; eco:b1451; -.
DR PATRIC; fig|1411691.4.peg.817; -.
DR EchoBASE; EB3536; -.
DR eggNOG; COG4772; Bacteria.
DR HOGENOM; CLU_008287_13_0_6; -.
DR InParanoid; P76115; -.
DR OMA; DTRWTHR; -.
DR PhylomeDB; P76115; -.
DR BioCyc; EcoCyc:G6762-MON; -.
DR PRO; PR:P76115; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0045203; C:integral component of cell outer membrane; IDA:EcoCyc.
DR GO; GO:0031230; C:intrinsic component of cell outer membrane; IBA:GO_Central.
DR GO; GO:0016020; C:membrane; IC:ComplexPortal.
DR GO; GO:1902495; C:transmembrane transporter complex; IC:ComplexPortal.
DR GO; GO:0015344; F:siderophore uptake transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0038023; F:signaling receptor activity; IEA:InterPro.
DR GO; GO:0055065; P:metal ion homeostasis; IC:ComplexPortal.
DR GO; GO:0044718; P:siderophore transmembrane transport; IBA:GO_Central.
DR Gene3D; 2.170.130.10; -; 1.
DR Gene3D; 2.40.170.20; -; 1.
DR InterPro; IPR039426; BtuB-like.
DR InterPro; IPR012910; Plug_dom.
DR InterPro; IPR037066; Plug_dom_sf.
DR InterPro; IPR000531; TonB-dep_rcpt_b-brl.
DR InterPro; IPR036942; TonB_rcpt_b-brl_sf.
DR InterPro; IPR010105; TonB_sidphr_rcpt.
DR PANTHER; PTHR30069; PTHR30069; 1.
DR Pfam; PF07715; Plug; 1.
DR Pfam; PF00593; TonB_dep_Rec; 1.
DR TIGRFAMs; TIGR01783; TonB-siderophor; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cell outer membrane; Membrane; Receptor; Reference proteome;
KW Signal; TonB box; Transmembrane; Transmembrane beta strand.
FT SIGNAL 1..23
FT /evidence="ECO:0000255"
FT CHAIN 24..700
FT /note="Probable TonB-dependent receptor YncD"
FT /id="PRO_0000034791"
FT MOTIF 680..700
FT /note="TonB C-terminal box"
FT STRAND 44..51
FT /evidence="ECO:0007829|PDB:6V81"
FT HELIX 52..55
FT /evidence="ECO:0007829|PDB:6V81"
FT TURN 56..58
FT /evidence="ECO:0007829|PDB:6V81"
FT HELIX 64..66
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 74..77
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 87..90
FT /evidence="ECO:0007829|PDB:6V81"
FT TURN 94..96
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 98..101
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 103..108
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 111..114
FT /evidence="ECO:0007829|PDB:6V81"
FT HELIX 127..129
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 130..138
FT /evidence="ECO:0007829|PDB:6V81"
FT HELIX 139..144
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 149..156
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 164..172
FT /evidence="ECO:0007829|PDB:6V81"
FT TURN 173..175
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 176..188
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 196..207
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 210..213
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 216..228
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 234..247
FT /evidence="ECO:0007829|PDB:6V81"
FT HELIX 254..259
FT /evidence="ECO:0007829|PDB:6V81"
FT HELIX 265..270
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 273..288
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 290..309
FT /evidence="ECO:0007829|PDB:6V81"
FT HELIX 316..318
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 325..342
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 346..368
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 385..408
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 411..428
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 440..468
FT /evidence="ECO:0007829|PDB:6V81"
FT HELIX 476..479
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 500..509
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 512..525
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 527..533
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 536..541
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 545..558
FT /evidence="ECO:0007829|PDB:6V81"
FT TURN 559..561
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 562..577
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 581..583
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 594..604
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 607..609
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 611..619
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 635..648
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 651..661
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 667..671
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 681..684
FT /evidence="ECO:0007829|PDB:6V81"
FT STRAND 686..698
FT /evidence="ECO:0007829|PDB:6V81"
SQ SEQUENCE 700 AA; 77261 MW; 7B3B96C6ABA48FE4 CRC64;
MKIFSVRQTV LPALLVLSPV VFAADEQTMI VSAAPQVVSE LDTPAAVSVV DGEEMRLATP
RINLSESLTG VPGLQVQNRQ NYAQDLQLSI RGFGSRSTYG IRGIRLYVDG IPATMPDGQG
QTSNIDLSSV QNVEVLRGPF SALYGNASGG VMNVTTQTGQ QPPTIEASSY YGSFGSWRYG
LKATGATGDG TQPGDVDYTV STTRFTTHGY RDHSGAQKNL ANAKLGVRID EASKLSLIFN
SVDIKADDPG GLTKAEWKAN PQQAPRAEQY DTRKTIKQTQ AGLRYERSLS SRDDMSVMMY
AGERETTQYQ SIPMAPQLNP SHAGGVITLQ RHYQGIDSRW THRGELGVPV TFTTGLNYEN
MSENRKGYNN FRLNSGMPEY GQKGELRRDE RNLMWNIDPY LQTQWQLSEK LSLDAGVRYS
SVWFDSNDHY VTPGNGDDSG DASYHKWLPA GSLKYAMTDA WNIYLAAGRG FETPTINELS
YRADGQSGMN LGLKPSTNDT IEIGSKTRIG DGLLSLALFQ TDTDDEIVVD SSSGGRTTYK
NAGKTRRQGA ELAWDQRFAG DFRVNASWTW LDATYRSNVC NEQDCNGNRM PGIARNMGFA
SIGYVPEDGW YAGTEARYMG DIMADDENTA KAPSYTLVGL FTGYKYNYHN LTVDLFGRVD
NLFDKEYVGS VIVNESNGRY YEPSPGRNYG VGMNIAWRFE
