TTDB_ECOLI
ID TTDB_ECOLI Reviewed; 201 AA.
AC P0AC35; P05851; P33131; Q2M9E3;
DT 08-NOV-2005, integrated into UniProtKB/Swiss-Prot.
DT 08-NOV-2005, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=L(+)-tartrate dehydratase subunit beta;
DE Short=L-TTD beta;
DE EC=4.2.1.32;
GN Name=ttdB; Synonyms=ygjB; OrderedLocusNames=b3062, JW3034;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], CATALYTIC ACTIVITY, AND SUBUNIT.
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8371115; DOI=10.1099/00221287-139-7-1523;
RA Reaney S.K., Begg C., Bungard S.I., Guest J.R.;
RT "Identification of the L-tartrate dehydratase genes (ttdA and ttdB) of
RT Escherichia coli and evolutionary relationship with the class I fumarase
RT genes.";
RL J. Gen. Microbiol. 139:1523-1530(1993).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=3297921; DOI=10.1016/0378-1119(87)90303-9;
RA Nesin M., Lupski J.R., Svec P., Godson G.N.;
RT "Possible new genes as revealed by molecular analysis of a 5-kb Escherichia
RT coli chromosomal region 5' to the rpsU-dnaG-rpoD macromolecular-synthesis
RT operon.";
RL Gene 51:149-161(1987).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [5]
RP INDUCTION.
RX PubMed=16804186; DOI=10.1099/mic.0.28753-0;
RA Oshima T., Biville F.;
RT "Functional identification of ygiP as a positive regulator of the ttdA-
RT ttdB-ygjE operon.";
RL Microbiology 152:2129-2135(2006).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=(2R,3R)-tartrate = H2O + oxaloacetate; Xref=Rhea:RHEA:15413,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:16452, ChEBI:CHEBI:30924; EC=4.2.1.32;
CC Evidence={ECO:0000269|PubMed:8371115};
CC -!- SUBUNIT: Heterotetramer of two alpha and two beta subunits.
CC {ECO:0000305|PubMed:8371115}.
CC -!- INDUCTION: Induced by tartrate, via TtdR.
CC {ECO:0000269|PubMed:16804186}.
CC -!- SIMILARITY: Belongs to the class-I fumarase family. {ECO:0000305}.
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DR EMBL; L14781; AAA03062.1; -; Unassigned_DNA.
DR EMBL; M16194; AAA72574.1; -; Genomic_DNA.
DR EMBL; U28379; AAA89142.1; -; Genomic_DNA.
DR EMBL; U00096; AAC76098.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE77113.1; -; Genomic_DNA.
DR PIR; D65094; QQECRZ.
DR RefSeq; NP_417534.1; NC_000913.3.
DR RefSeq; WP_000722957.1; NZ_STEB01000001.1.
DR AlphaFoldDB; P0AC35; -.
DR SMR; P0AC35; -.
DR BioGRID; 4261199; 429.
DR ComplexPortal; CPX-5912; L-tartrate dehydratase complex.
DR IntAct; P0AC35; 2.
DR STRING; 511145.b3062; -.
DR PaxDb; P0AC35; -.
DR PRIDE; P0AC35; -.
DR DNASU; 947568; -.
DR EnsemblBacteria; AAC76098; AAC76098; b3062.
DR EnsemblBacteria; BAE77113; BAE77113; BAE77113.
DR GeneID; 67414991; -.
DR GeneID; 947568; -.
DR KEGG; ecj:JW3034; -.
DR KEGG; eco:b3062; -.
DR PATRIC; fig|511145.12.peg.3156; -.
DR EchoBASE; EB1157; -.
DR eggNOG; COG1838; Bacteria.
DR HOGENOM; CLU_098588_0_0_6; -.
DR InParanoid; P0AC35; -.
DR OMA; IYHCGPL; -.
DR PhylomeDB; P0AC35; -.
DR BioCyc; EcoCyc:TTDB-MON; -.
DR BioCyc; MetaCyc:TTDB-MON; -.
DR PRO; PR:P0AC35; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:1902494; C:catalytic complex; IC:ComplexPortal.
DR GO; GO:0008730; F:L(+)-tartrate dehydratase activity; IEA:UniProtKB-EC.
DR GO; GO:0009408; P:response to heat; IMP:EcoCyc.
DR GO; GO:1901276; P:tartrate catabolic process; IC:ComplexPortal.
DR Gene3D; 3.20.130.10; -; 1.
DR InterPro; IPR004647; Fe-S_hydro-lyase_TtdB-typ_cat.
DR InterPro; IPR036660; Fe-S_hydroAse_TtdB_cat_sf.
DR Pfam; PF05683; Fumerase_C; 1.
DR SUPFAM; SSF117457; SSF117457; 1.
DR TIGRFAMs; TIGR00723; ttdB_fumA_fumB; 1.
PE 1: Evidence at protein level;
KW Lyase; Reference proteome.
FT CHAIN 1..201
FT /note="L(+)-tartrate dehydratase subunit beta"
FT /id="PRO_0000195664"
FT ACT_SITE 37
FT /evidence="ECO:0000255"
FT CONFLICT 80..85
FT /note="SMRMES -> QYAYGK (in Ref. 1 and 2)"
FT /evidence="ECO:0000305"
FT CONFLICT 165
FT /note="V -> A (in Ref. 1 and 2)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 201 AA; 22679 MW; E81321CD19A8BE5C CRC64;
MKKILTTPIK AEDLQDIRVG DVIYLTGTLV TCRDVCHRRL IELKRPIPYD LNGKAIFHAG
PIVRKNGDKW EMVSVGPTTS MRMESFEREF IEQTGVKLVV GKGGMGPLTE EGCQKFKALH
VIFPAGCAVL AATQVEEIEE VHWTELGMPE SLWVCRVKEF GPLIVSIDTH GNNLIAENKK
LFAERRDPIV EEICEHVHYI K