TSN13_RAT
ID TSN13_RAT Reviewed; 204 AA.
AC Q5FVL6;
DT 26-APR-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2005, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Tetraspanin-13;
DE Short=Tspan-13;
DE AltName: Full=Transmembrane 4 superfamily member 13;
GN Name=Tspan13; Synonyms=Tm4sf13;
OS Rattus norvegicus (Rat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Rattus.
OX NCBI_TaxID=10116;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Lung;
RX PubMed=15489334; DOI=10.1101/gr.2596504;
RG The MGC Project Team;
RT "The status, quality, and expansion of the NIH full-length cDNA project:
RT the Mammalian Gene Collection (MGC).";
RL Genome Res. 14:2121-2127(2004).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the tetraspanin (TM4SF) family. {ECO:0000305}.
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DR EMBL; BC089906; AAH89906.1; -; mRNA.
DR RefSeq; NP_001013262.1; NM_001013244.1.
DR AlphaFoldDB; Q5FVL6; -.
DR SMR; Q5FVL6; -.
DR STRING; 10116.ENSRNOP00000006752; -.
DR GlyGen; Q5FVL6; 2 sites.
DR iPTMnet; Q5FVL6; -.
DR PhosphoSitePlus; Q5FVL6; -.
DR PaxDb; Q5FVL6; -.
DR PRIDE; Q5FVL6; -.
DR Ensembl; ENSRNOT00000006752; ENSRNOP00000006752; ENSRNOG00000005046.
DR GeneID; 366602; -.
DR KEGG; rno:366602; -.
DR UCSC; RGD:1311788; rat.
DR CTD; 27075; -.
DR RGD; 1311788; Tspan13.
DR eggNOG; KOG3882; Eukaryota.
DR GeneTree; ENSGT00940000157010; -.
DR HOGENOM; CLU_088363_0_0_1; -.
DR InParanoid; Q5FVL6; -.
DR OMA; CPPCAPI; -.
DR OrthoDB; 1203231at2759; -.
DR PhylomeDB; Q5FVL6; -.
DR TreeFam; TF323367; -.
DR PRO; PR:Q5FVL6; -.
DR Proteomes; UP000002494; Chromosome 6.
DR Bgee; ENSRNOG00000005046; Expressed in stomach and 19 other tissues.
DR Genevisible; Q5FVL6; RN.
DR GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
DR GO; GO:0005886; C:plasma membrane; ISO:RGD.
DR GO; GO:0005246; F:calcium channel regulator activity; ISO:RGD.
DR GO; GO:1903169; P:regulation of calcium ion transmembrane transport; ISO:RGD.
DR InterPro; IPR018499; Tetraspanin/Peripherin.
DR InterPro; IPR000301; Tetraspanin_animals.
DR InterPro; IPR008952; Tetraspanin_EC2_sf.
DR PANTHER; PTHR19282; PTHR19282; 1.
DR Pfam; PF00335; Tetraspanin; 1.
DR PIRSF; PIRSF002419; Tetraspanin; 1.
DR SUPFAM; SSF48652; SSF48652; 1.
PE 2: Evidence at transcript level;
KW Glycoprotein; Membrane; Phosphoprotein; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..204
FT /note="Tetraspanin-13"
FT /id="PRO_0000219260"
FT TOPO_DOM 1..19
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 20..40
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 41..44
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 45..65
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 66..72
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 73..93
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 94..167
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 168..188
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 189..204
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT MOD_RES 143
FT /note="Phosphoserine"
FT /evidence="ECO:0000250|UniProtKB:Q9D8C2"
FT CARBOHYD 113
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000250"
FT CARBOHYD 137
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000250"
SQ SEQUENCE 204 AA; 22259 MW; EF8A4E08D8CAE5E1 CRC64;
MVCGGFSCSK NCLCALNLLY TLVSLLLIGI AAWGIGFGLI SSLRVVGVVI AVGIFLFLIA
LVGLIGAVKH HQVLLFFYMI ILLLVFIVQF SVSCACLALN REQQGQLLEV GWNNTASARN
DIQRNLNCCG FRNYNPNDTC PASCAKSNQK CSSCAPIIGE YAGEVLRFVG GIGLFFSFTE
ILGVWLTYRY RNQKDPRANP SAFL