BRXL4_ORYSJ
ID BRXL4_ORYSJ Reviewed; 329 AA.
AC Q84T65; B9F7N6;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 78.
DE RecName: Full=Protein Brevis radix-like 4;
DE Short=OsBRXL4;
GN Name=BRXL4; OrderedLocusNames=Os03g0853500, LOC_Os03g63650;
GN ORFNames=OsJ_13410;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP GENE FAMILY.
RX PubMed=16514016; DOI=10.1104/pp.105.075382;
RA Briggs G.C., Mouchel C.F., Hardtke C.S.;
RT "Characterization of the plant-specific BREVIS RADIX gene family reveals
RT limited genetic redundancy despite high sequence conservation.";
RL Plant Physiol. 140:1306-1316(2006).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the BRX family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=EEE60323.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC120506; AAO66543.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF99952.1; -; Genomic_DNA.
DR EMBL; AP014959; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM000140; EEE60323.1; ALT_SEQ; Genomic_DNA.
DR AlphaFoldDB; Q84T65; -.
DR SMR; Q84T65; -.
DR STRING; 4530.OS03T0853500-00; -.
DR PaxDb; Q84T65; -.
DR PRIDE; Q84T65; -.
DR eggNOG; ENOG502SHZG; Eukaryota.
DR HOGENOM; CLU_033380_0_1_1; -.
DR InParanoid; Q84T65; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q84T65; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR InterPro; IPR013591; Brevis_radix_dom.
DR InterPro; IPR044532; BRX-like.
DR PANTHER; PTHR46058; PTHR46058; 1.
DR Pfam; PF08381; BRX; 2.
DR PROSITE; PS51514; BRX; 2.
PE 3: Inferred from homology;
KW Nucleus; Reference proteome; Repeat.
FT CHAIN 1..329
FT /note="Protein Brevis radix-like 4"
FT /id="PRO_0000373829"
FT DOMAIN 86..142
FT /note="BRX 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00847"
FT DOMAIN 274..329
FT /note="BRX 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00847"
FT REGION 12..37
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 151..263
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 164..179
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 196..211
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 224..240
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 329 AA; 36894 MW; AC82B41BC9C1B97C CRC64;
MIQLKDMVMK LSGTSRHHGQ QRRGGSPPPR GRTTSVYRSG YYRPGMVQDD MAVPPATYLG
GGGTSMSSAS STPAWDFARP AEGEAREWVA QVEPGVQITF VSLAGGGGND LKRIRFSREM
YDKWQAQKWW GENNERIMEL YNVRRFSRQV LPTPPRSDDG ERESFYSQVG STRGSPAATP
SPAPLTPDRV TSWSAFVRPP SASRQQQQHS FRPLSPPPPS SSNPSERAWQ QQQQPQRAGK
SPAAASDAMD AARTTSCSSR DEVSISNASE LEVTEWVIQD EPGVYITVRE LADGTRELRR
VRFSRERFAE LNAKLWWEEN KERIQAQYL
