SDH6_ORYSJ
ID SDH6_ORYSJ Reviewed; 142 AA.
AC Q6ZCC4; A0A0P0XB41;
DT 04-FEB-2015, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=Succinate dehydrogenase subunit 6, mitochondrial {ECO:0000305};
GN Name=SDH6 {ECO:0000305};
GN OrderedLocusNames=Os08g0112800 {ECO:0000312|EMBL:BAF22748.1},
GN LOC_Os08g02080 {ECO:0000305};
GN ORFNames=OsJ_25800 {ECO:0000312|EMBL:EAZ41292.1},
GN P0498H04.25 {ECO:0000312|EMBL:BAD09512.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBUNIT.
RX PubMed=19924544; DOI=10.1007/s11103-009-9573-z;
RA Huang S., Taylor N.L., Narsai R., Eubel H., Whelan J., Millar A.H.;
RT "Functional and composition differences between mitochondrial complex II in
RT Arabidopsis and rice are correlated with the complex genetic history of the
RT enzyme.";
RL Plant Mol. Biol. 72:331-342(2010).
CC -!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle.
CC {ECO:0000305}.
CC -!- SUBUNIT: Component of complex II composed of eight subunits in plants:
CC four classical SDH subunits SDH1, SDH2, SDH3 and SDH4 (a flavoprotein
CC (FP), an iron-sulfur protein (IP), and a cytochrome b composed of a
CC large and a small subunit.), as well as four subunits unknown in
CC mitochondria from bacteria and heterotrophic eukaryotes.
CC {ECO:0000269|PubMed:19924544}.
CC -!- SUBCELLULAR LOCATION: Mitochondrion inner membrane {ECO:0000305};
CC Peripheral membrane protein {ECO:0000305}.
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DR EMBL; AP004566; BAD09512.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF22748.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT03520.1; -; Genomic_DNA.
DR EMBL; CM000145; EAZ41292.1; -; Genomic_DNA.
DR EMBL; AK121176; BAH00351.1; -; mRNA.
DR RefSeq; XP_015650792.1; XM_015795306.1.
DR AlphaFoldDB; Q6ZCC4; -.
DR STRING; 4530.OS08T0112800-01; -.
DR PaxDb; Q6ZCC4; -.
DR PRIDE; Q6ZCC4; -.
DR EnsemblPlants; Os08t0112800-01; Os08t0112800-01; Os08g0112800.
DR GeneID; 4344494; -.
DR Gramene; Os08t0112800-01; Os08t0112800-01; Os08g0112800.
DR KEGG; osa:4344494; -.
DR eggNOG; ENOG502RZ7U; Eukaryota.
DR HOGENOM; CLU_116953_0_0_1; -.
DR InParanoid; Q6ZCC4; -.
DR OMA; DKPIPSW; -.
DR OrthoDB; 1404330at2759; -.
DR UniPathway; UPA00223; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000007752; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; Q6ZCC4; OS.
DR GO; GO:0005749; C:mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone); IBA:GO_Central.
DR GO; GO:0019867; C:outer membrane; IEA:InterPro.
DR GO; GO:0045273; C:respiratory chain complex II; IDA:UniProtKB.
DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-UniPathway.
DR InterPro; IPR008816; Gly_zipper_2TM_dom.
DR InterPro; IPR034574; SDH6.
DR PANTHER; PTHR36708; PTHR36708; 1.
DR Pfam; PF05433; Rick_17kDa_Anti; 1.
PE 1: Evidence at protein level;
KW Membrane; Mitochondrion; Mitochondrion inner membrane; Reference proteome;
KW Tricarboxylic acid cycle.
FT CHAIN 1..142
FT /note="Succinate dehydrogenase subunit 6, mitochondrial"
FT /id="PRO_0000431753"
SQ SEQUENCE 142 AA; 15728 MW; 2C1225E99717AE39 CRC64;
MGIHEHVEGI KAHWAKNFSF LDYFKKVYGR DKPLPKWTDA DVDEFIASDP VYGPQLKAMR
ESRKFALGGA LVGGAHLGGI ALKYSKAPHG VVLATGFGAI CGAVVGSEVA EHWYQLYKTD
KQGANLRFIY WWEDKVAGNQ KS
