SCR1_ORYSJ
ID SCR1_ORYSJ Reviewed; 651 AA.
AC Q2RB59; A0A0P0XY98; A3C836;
DT 08-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 03-AUG-2022, entry version 86.
DE RecName: Full=Protein SCARECROW 1;
DE AltName: Full=OsSCR1;
GN Name=SCR1; OrderedLocusNames=Os11g0124300, LOC_Os11g03110;
GN ORFNames=OsJ_031458;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP FUNCTION, TISSUE SPECIFICITY, AND INTERACTION WITH SHR1.
RX PubMed=17446396; DOI=10.1126/science.1139531;
RA Cui H., Levesque M.P., Vernoux T., Jung J.W., Paquette A.J.,
RA Gallagher K.L., Wang J.Y., Blilou I., Scheres B., Benfey P.N.;
RT "An evolutionarily conserved mechanism delimiting SHR movement defines a
RT single layer of endodermis in plants.";
RL Science 316:421-425(2007).
CC -!- FUNCTION: Transcription factor required for quiescent center cells
CC specification and maintenance of surrounding stem cells, and for the
CC asymmetric cell division involved in radial pattern formation in roots.
CC Essential for cell division but not differentiation of the ground
CC tissue. Regulates the radial organization of the shoot axial organs.
CC Restricts SHR movment and sequesters it into the nucleus of the
CC endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
CC -!- SUBUNIT: Interacts with SHR1, but not with SHR2.
CC {ECO:0000269|PubMed:17446396}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in the initial daughter cell before its
CC asymmetric division and remains expressed in the endodermal cell layer
CC after the division. {ECO:0000269|PubMed:17446396}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=EAZ17249.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; DP000010; ABA91267.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF27462.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT12470.1; -; Genomic_DNA.
DR EMBL; CM000148; EAZ17249.1; ALT_INIT; Genomic_DNA.
DR RefSeq; XP_015615402.1; XM_015759916.1.
DR AlphaFoldDB; Q2RB59; -.
DR SMR; Q2RB59; -.
DR BioGRID; 818675; 2.
DR STRING; 4530.OS11T0124300-01; -.
DR PaxDb; Q2RB59; -.
DR PRIDE; Q2RB59; -.
DR EnsemblPlants; Os11t0124300-01; Os11t0124300-01; Os11g0124300.
DR GeneID; 4349638; -.
DR Gramene; Os11t0124300-01; Os11t0124300-01; Os11g0124300.
DR KEGG; osa:4349638; -.
DR eggNOG; ENOG502QTMY; Eukaryota.
DR HOGENOM; CLU_011924_7_2_1; -.
DR InParanoid; Q2RB59; -.
DR OMA; FPRRTLV; -.
DR OrthoDB; 772613at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000007752; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR Genevisible; Q2RB59; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0008356; P:asymmetric cell division; IBA:GO_Central.
DR GO; GO:0090610; P:bundle sheath cell fate specification; IBA:GO_Central.
DR GO; GO:0009630; P:gravitropism; IBA:GO_Central.
DR GO; GO:0048366; P:leaf development; IBA:GO_Central.
DR GO; GO:0051457; P:maintenance of protein location in nucleus; IBA:GO_Central.
DR GO; GO:0009956; P:radial pattern formation; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 1: Evidence at protein level;
KW Coiled coil; Developmental protein; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..651
FT /note="Protein SCARECROW 1"
FT /id="PRO_0000329417"
FT DOMAIN 274..644
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 1..33
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 188..277
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 281..345
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 364..429
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 439..471
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 480..567
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 570..644
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COILED 253..280
FT /evidence="ECO:0000255"
FT MOTIF 288..292
FT /note="LxCxE motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 395..399
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COMPBIAS 188..227
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 261..277
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 651 AA; 69918 MW; 5C110704A23992BB CRC64;
MGSSSLLLFP SSSSSATHSS YSPSSSSHAI TSLLPPLPSD HHLLLYLDHQ EQHHLAAAMV
RKRPASDMDL PPPRRHVTGD LSDVTAAAAP SSASAQLPAL PTQLPAFHHT DMDLAAPAPP
PPQQQVAAGE GGPPSTAWVD GIIRDIIASS GAAVSVAQLI HNVREIIRPC NPDLASILEL
RLRSLLTSDP APPPPPPPSH PALLPPDATA PPPPPTSVAA LPPPPPPQPD KRRREPQCQE
QEPNQPQSPK PPTAEETAAA AAAAKERKEE QRRKQRDEEG LHLLTLLLQC AESVNADNLD
EAHRALLEIA ELATPFGTST QRVAAYFAEA MSARLVSSCL GLYAPLPNPS PAAARLHGRV
AAAFQVFNGI SPFVKFSHFT ANQAIQEAFE REERVHIIDL DIMQGLQWPG LFHILASRPG
GPPRVRLTGL GASMEALEAT GKRLSDFADT LGLPFEFCPV ADKAGNLDPE KLGVTRREAV
AVHWLRHSLY DVTGSDSNTL WLIQRLAPKV VTMVEQDLSH SGSFLARFVE AIHYYSALFD
SLDASYSEDS PERHVVEQQL LSREIRNVLA VGGPARTGDV KFGSWREKLA QSGFRVSSLA
GSAAAQAVLL LGMFPSDGYT LIEENGALKL GWKDLCLLTA SAWRPIQASG R
