RL132_ARATH
ID RL132_ARATH Reviewed; 206 AA.
AC Q9SMT4;
DT 27-JUN-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Putative 60S ribosomal protein L13-2;
GN Name=RPL13C; OrderedLocusNames=At3g48960; ORFNames=T2J13.200;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL13 family.
CC {ECO:0000305}.
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DR EMBL; AL132967; CAB62014.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78477.1; -; Genomic_DNA.
DR PIR; T46134; T46134.
DR RefSeq; NP_190465.1; NM_114755.1.
DR AlphaFoldDB; Q9SMT4; -.
DR SMR; Q9SMT4; -.
DR BioGRID; 9375; 128.
DR STRING; 3702.AT3G48960.1; -.
DR PaxDb; Q9SMT4; -.
DR PRIDE; Q9SMT4; -.
DR EnsemblPlants; AT3G48960.1; AT3G48960.1; AT3G48960.
DR GeneID; 824057; -.
DR Gramene; AT3G48960.1; AT3G48960.1; AT3G48960.
DR KEGG; ath:AT3G48960; -.
DR Araport; AT3G48960; -.
DR TAIR; locus:2101328; AT3G48960.
DR eggNOG; KOG3295; Eukaryota.
DR HOGENOM; CLU_075696_1_0_1; -.
DR InParanoid; Q9SMT4; -.
DR OMA; RRKNRCE; -.
DR OrthoDB; 1239434at2759; -.
DR PhylomeDB; Q9SMT4; -.
DR PRO; PR:Q9SMT4; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SMT4; baseline and differential.
DR Genevisible; Q9SMT4; AT.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR HAMAP; MF_00499; Ribosomal_L13e; 1.
DR InterPro; IPR001380; Ribosomal_L13e.
DR InterPro; IPR018256; Ribosomal_L13e_CS.
DR PANTHER; PTHR11722; PTHR11722; 1.
DR Pfam; PF01294; Ribosomal_L13e; 1.
DR PROSITE; PS01104; RIBOSOMAL_L13E; 1.
PE 3: Inferred from homology;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..206
FT /note="Putative 60S ribosomal protein L13-2"
FT /id="PRO_0000240514"
SQ SEQUENCE 206 AA; 23503 MW; BA8FF67659CF1186 CRC64;
MKHNNVIPNG HFKKKWENYV KTSFNQPAMK TRRRIARQNK AVKIFPRPTA GPIRPVVHAQ
TLTYNMKVRA GKGFTLEELK AAGIPKKLAP TIGISVDHHR KNRSLEGFQT NVQRLKTYKA
KLVIFPRCAR TVKVGDSAQQ ELANATQVQV DHMPIVREMP TMELVKLTSD MKLFNAYDKI
RLEGINKRHA GVRAKRAAEA EKEEKK