PPR50_ARATH
ID PPR50_ARATH Reviewed; 904 AA.
AC Q9LN69; Q9LM99;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g19290;
GN OrderedLocusNames=At1g19290; ORFNames=F18O14.1, T29M8.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79419.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=AAF82237.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g19270 and At1g19290.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC025808; AAF79419.1; ALT_INIT; Genomic_DNA.
DR EMBL; AC069143; AAF82237.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE29826.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM60995.1; -; Genomic_DNA.
DR PIR; D86326; D86326.
DR RefSeq; NP_001319043.1; NM_001332390.1.
DR RefSeq; NP_173362.2; NM_101786.3.
DR AlphaFoldDB; Q9LN69; -.
DR SMR; Q9LN69; -.
DR PaxDb; Q9LN69; -.
DR PRIDE; Q9LN69; -.
DR ProteomicsDB; 234795; -.
DR EnsemblPlants; AT1G19290.1; AT1G19290.1; AT1G19290.
DR EnsemblPlants; AT1G19290.2; AT1G19290.2; AT1G19290.
DR GeneID; 838511; -.
DR Gramene; AT1G19290.1; AT1G19290.1; AT1G19290.
DR Gramene; AT1G19290.2; AT1G19290.2; AT1G19290.
DR KEGG; ath:AT1G19290; -.
DR Araport; AT1G19290; -.
DR TAIR; locus:2016427; AT1G19290.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_10_1; -.
DR InParanoid; Q9LN69; -.
DR OMA; TEVYNQF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LN69; -.
DR PRO; PR:Q9LN69; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LN69; baseline and differential.
DR Genevisible; Q9LN69; AT.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0000963; P:mitochondrial RNA processing; IMP:TAIR.
DR GO; GO:0008380; P:RNA splicing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 9.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 6.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 15.
DR PROSITE; PS51375; PPR; 20.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..904
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g19290"
FT /id="PRO_0000342791"
FT REPEAT 154..188
FT /note="PPR 1"
FT REPEAT 189..223
FT /note="PPR 2"
FT REPEAT 224..254
FT /note="PPR 3"
FT REPEAT 260..294
FT /note="PPR 4"
FT REPEAT 295..329
FT /note="PPR 5"
FT REPEAT 330..364
FT /note="PPR 6"
FT REPEAT 365..399
FT /note="PPR 7"
FT REPEAT 400..434
FT /note="PPR 8"
FT REPEAT 435..469
FT /note="PPR 9"
FT REPEAT 470..504
FT /note="PPR 10"
FT REPEAT 505..539
FT /note="PPR 11"
FT REPEAT 540..574
FT /note="PPR 12"
FT REPEAT 575..609
FT /note="PPR 13"
FT REPEAT 610..644
FT /note="PPR 14"
FT REPEAT 645..679
FT /note="PPR 15"
FT REPEAT 718..753
FT /note="PPR 16"
FT REPEAT 754..788
FT /note="PPR 17"
FT REPEAT 789..823
FT /note="PPR 18"
FT REPEAT 824..858
FT /note="PPR 19"
SQ SEQUENCE 904 AA; 101860 MW; B5004C87AD006950 CRC64;
MLRRSPARVV AYQLLPFLYT RSFSEASRTL RRELRGGNGR IRPELLERVS RLLVLGRYEA
LHDLSLDFSD ELLNSILRRL RLNPEACLEI FNLASKQQKF RPDYKAYCKM VHILSRARNY
QQTKSYLCEL VALNHSGFVV WGELVRVFKE FSFSPTVFDM ILKVYAEKGL VKNALHVFDN
MGNYGRIPSL LSCNSLLSNL VRKGENFVAL HVYDQMISFE VSPDVFTCSI VVNAYCRSGN
VDKAMVFAKE TESSLGLELN VVTYNSLING YAMIGDVEGM TRVLRLMSER GVSRNVVTYT
SLIKGYCKKG LMEEAEHVFE LLKEKKLVAD QHMYGVLMDG YCRTGQIRDA VRVHDNMIEI
GVRTNTTICN SLINGYCKSG QLVEAEQIFS RMNDWSLKPD HHTYNTLVDG YCRAGYVDEA
LKLCDQMCQK EVVPTVMTYN ILLKGYSRIG AFHDVLSLWK MMLKRGVNAD EISCSTLLEA
LFKLGDFNEA MKLWENVLAR GLLTDTITLN VMISGLCKME KVNEAKEILD NVNIFRCKPA
VQTYQALSHG YYKVGNLKEA FAVKEYMERK GIFPTIEMYN TLISGAFKYR HLNKVADLVI
ELRARGLTPT VATYGALITG WCNIGMIDKA YATCFEMIEK GITLNVNICS KIANSLFRLD
KIDEACLLLQ KIVDFDLLLP GYQSLKEFLE ASATTCLKTQ KIAESVENST PKKLLVPNNI
VYNVAIAGLC KAGKLEDARK LFSDLLSSDR FIPDEYTYTI LIHGCAIAGD INKAFTLRDE
MALKGIIPNI VTYNALIKGL CKLGNVDRAQ RLLHKLPQKG ITPNAITYNT LIDGLVKSGN
VAEAMRLKEK MIEKGLVRGS DKQGDVDIPK EVVLDPEVKL GSTGVIEMNS NELYDVRRVS
EAVV
