PPR48_ARATH
ID PPR48_ARATH Reviewed; 970 AA.
AC Q0WN60; Q9LPR3;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g18485;
GN Name=PCMP-H8; OrderedLocusNames=At1g18485; ORFNames=F15H18.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 251-970.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF26001.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g18480 and At1g18485.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC013354; AAF26001.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE29720.1; -; Genomic_DNA.
DR EMBL; AK229592; BAF01440.1; -; mRNA.
DR PIR; E86318; E86318.
DR RefSeq; NP_564054.1; NM_101706.4.
DR AlphaFoldDB; Q0WN60; -.
DR SMR; Q0WN60; -.
DR STRING; 3702.AT1G18485.1; -.
DR PaxDb; Q0WN60; -.
DR PRIDE; Q0WN60; -.
DR ProteomicsDB; 234899; -.
DR EnsemblPlants; AT1G18485.1; AT1G18485.1; AT1G18485.
DR GeneID; 838429; -.
DR Gramene; AT1G18485.1; AT1G18485.1; AT1G18485.
DR KEGG; ath:AT1G18485; -.
DR Araport; AT1G18485; -.
DR TAIR; locus:505006130; AT1G18485.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q0WN60; -.
DR OMA; FQWNALV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q0WN60; -.
DR PRO; PR:Q0WN60; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q0WN60; baseline and differential.
DR Genevisible; Q0WN60; AT.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 18.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..970
FT /note="Pentatricopeptide repeat-containing protein
FT At1g18485"
FT /id="PRO_0000342789"
FT REPEAT 119..149
FT /note="PPR 1"
FT REPEAT 150..185
FT /note="PPR 2"
FT REPEAT 186..220
FT /note="PPR 3"
FT REPEAT 221..251
FT /note="PPR 4"
FT REPEAT 252..282
FT /note="PPR 5"
FT REPEAT 291..325
FT /note="PPR 6"
FT REPEAT 326..356
FT /note="PPR 7"
FT REPEAT 357..391
FT /note="PPR 8"
FT REPEAT 394..428
FT /note="PPR 9"
FT REPEAT 429..459
FT /note="PPR 10"
FT REPEAT 460..494
FT /note="PPR 11"
FT REPEAT 495..529
FT /note="PPR 12"
FT REPEAT 530..560
FT /note="PPR 13"
FT REPEAT 561..595
FT /note="PPR 14"
FT REPEAT 597..630
FT /note="PPR 15"
FT REPEAT 631..661
FT /note="PPR 16"
FT REPEAT 662..696
FT /note="PPR 17"
FT REPEAT 697..727
FT /note="PPR 18"
FT REPEAT 733..764
FT /note="PPR 19"
FT REGION 770..845
FT /note="Type E motif"
FT REGION 846..875
FT /note="Type E(+) motif"
FT REGION 876..970
FT /note="Type DYW motif"
FT CONFLICT 253
FT /note="L -> F (in Ref. 3; BAF01440)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 970 AA; 108809 MW; 67EE8985B33C9CB9 CRC64;
MASVLLPLPQ VFVLFDYRRS RKESSFPRAV YNSNSISSNS TNANHFLRRI SNFCETGDLD
KSFRTVQEFV GDDESSSDAF LLVREALGLL LQASGKRKDI EMGRKIHQLV SGSTRLRNDD
VLCTRIITMY AMCGSPDDSR FVFDALRSKN LFQWNAVISS YSRNELYDEV LETFIEMIST
TDLLPDHFTY PCVIKACAGM SDVGIGLAVH GLVVKTGLVE DVFVGNALVS FYGTHGFVTD
ALQLFDIMPE RNLVSWNSMI RVFSDNGFSE ESFLLLGEMM EENGDGAFMP DVATLVTVLP
VCAREREIGL GKGVHGWAVK LRLDKELVLN NALMDMYSKC GCITNAQMIF KMNNNKNVVS
WNTMVGGFSA EGDTHGTFDV LRQMLAGGED VKADEVTILN AVPVCFHESF LPSLKELHCY
SLKQEFVYNE LVANAFVASY AKCGSLSYAQ RVFHGIRSKT VNSWNALIGG HAQSNDPRLS
LDAHLQMKIS GLLPDSFTVC SLLSACSKLK SLRLGKEVHG FIIRNWLERD LFVYLSVLSL
YIHCGELCTV QALFDAMEDK SLVSWNTVIT GYLQNGFPDR ALGVFRQMVL YGIQLCGISM
MPVFGACSLL PSLRLGREAH AYALKHLLED DAFIACSLID MYAKNGSITQ SSKVFNGLKE
KSTASWNAMI MGYGIHGLAK EAIKLFEEMQ RTGHNPDDLT FLGVLTACNH SGLIHEGLRY
LDQMKSSFGL KPNLKHYACV IDMLGRAGQL DKALRVVAEE MSEEADVGIW KSLLSSCRIH
QNLEMGEKVA AKLFELEPEK PENYVLLSNL YAGLGKWEDV RKVRQRMNEM SLRKDAGCSW
IELNRKVFSF VVGERFLDGF EEIKSLWSIL EMKISKMGYR PDTMSVQHDL SEEEKIEQLR
GHSEKLALTY GLIKTSEGTT IRVYKNLRIC VDCHNAAKLI SKVMEREIVV RDNKRFHHFK
NGVCSCGDYW
