PPR47_ARATH
ID PPR47_ARATH Reviewed; 731 AA.
AC Q9LNP2;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g17630;
GN Name=PCMP-E72; OrderedLocusNames=At1g17630; ORFNames=F1L3.33;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC022492; AAF79473.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29616.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59320.1; -; Genomic_DNA.
DR RefSeq; NP_001319030.1; NM_001332315.1.
DR RefSeq; NP_173207.1; NM_101626.1.
DR AlphaFoldDB; Q9LNP2; -.
DR SMR; Q9LNP2; -.
DR PaxDb; Q9LNP2; -.
DR PRIDE; Q9LNP2; -.
DR ProteomicsDB; 226312; -.
DR EnsemblPlants; AT1G17630.1; AT1G17630.1; AT1G17630.
DR EnsemblPlants; AT1G17630.2; AT1G17630.2; AT1G17630.
DR GeneID; 838340; -.
DR Gramene; AT1G17630.1; AT1G17630.1; AT1G17630.
DR Gramene; AT1G17630.2; AT1G17630.2; AT1G17630.
DR KEGG; ath:AT1G17630; -.
DR Araport; AT1G17630; -.
DR TAIR; locus:2007888; AT1G17630.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_5_1; -.
DR InParanoid; Q9LNP2; -.
DR OMA; NHLHVVN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LNP2; -.
DR PRO; PR:Q9LNP2; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LNP2; baseline and differential.
DR Genevisible; Q9LNP2; AT.
DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IGI:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 7.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..731
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g17630"
FT /id="PRO_0000342788"
FT REPEAT 88..118
FT /note="PPR 1"
FT REPEAT 122..156
FT /note="PPR 2"
FT REPEAT 157..191
FT /note="PPR 3"
FT REPEAT 192..222
FT /note="PPR 4"
FT REPEAT 223..257
FT /note="PPR 5"
FT REPEAT 258..292
FT /note="PPR 6"
FT REPEAT 293..327
FT /note="PPR 7"
FT REPEAT 328..358
FT /note="PPR 8"
FT REPEAT 359..393
FT /note="PPR 9"
FT REPEAT 398..432
FT /note="PPR 10"
FT REPEAT 433..467
FT /note="PPR 11"
FT REPEAT 468..498
FT /note="PPR 12"
FT REPEAT 499..533
FT /note="PPR 13"
FT REPEAT 534..569
FT /note="PPR 14"
FT REPEAT 570..600
FT /note="PPR 15"
FT REGION 605..680
FT /note="Type E motif"
FT REGION 681..711
FT /note="Type E(+) motif"
SQ SEQUENCE 731 AA; 82272 MW; A210CE5F31F501CE CRC64;
MVHASLWQFR LQIIPWRLRN FCFLTSQCPY TSISSPDTVS VSSYYSLTSN NDQSLFHYFD
HLLGLCLTAQ QCRQVHAQVL LSDFIFRSGS LAANLISVYA RLGLLLDARN VFETVSLVLL
SDLRLWNSIL KANVSHGLYE NALELYRGMR QRGLTGDGYI LPLILRACRY LGRFGLCRAF
HTQVIQIGLK ENLHVVNELL TLYPKAGRMG DAYNLFVEMP VRNRMSWNVM IKGFSQEYDC
ESAVKIFEWM QREEFKPDEV TWTSVLSCHS QCGKFEDVLK YFHLMRMSGN AVSGEALAVF
FSVCAELEAL SIAEKVHGYV IKGGFEEYLP SRNALIHVYG KQGKVKDAEH LFRQIRNKGI
ESWNSLITSF VDAGKLDEAL SLFSELEEMN HVCNVKANVV TWTSVIKGCN VQGRGDDSLE
YFRQMQFSKV LANSVTICCI LSICAELPAL NLGREIHGHV IRTSMSENIL VQNALVNMYA
KCGLLSEGSL VFEAIRDKDL ISWNSIIKGY GMHGFAEKAL SMFDRMISSG FHPDGIALVA
VLSACSHAGL VEKGREIFYS MSKRFGLEPQ QEHYACIVDL LGRVGFLKEA SEIVKNMPME
PKVCVLGALL NSCRMHKNVD IAEGIASQLS VLEPERTGSY MLLSNIYSAG GRWEESANVR
ALAKKKDLKK VSGSSWIEVK KKKYKFSSGS IVQSEFETIY PVLEDLVSHM LKKGPTHDGN
NYEDDLDLWT A
