PPR44_ARATH
ID PPR44_ARATH Reviewed; 594 AA.
AC Q9XI21;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 25-MAY-2022, entry version 108.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g15480, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g15480; ORFNames=F9L1.43;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD39676.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007591; AAD39676.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE29328.1; -; Genomic_DNA.
DR RefSeq; NP_173001.2; NM_101417.4.
DR AlphaFoldDB; Q9XI21; -.
DR SMR; Q9XI21; -.
DR STRING; 3702.AT1G15480.1; -.
DR iPTMnet; Q9XI21; -.
DR PaxDb; Q9XI21; -.
DR PRIDE; Q9XI21; -.
DR ProteomicsDB; 226404; -.
DR EnsemblPlants; AT1G15480.1; AT1G15480.1; AT1G15480.
DR GeneID; 838118; -.
DR Gramene; AT1G15480.1; AT1G15480.1; AT1G15480.
DR KEGG; ath:AT1G15480; -.
DR Araport; AT1G15480; -.
DR TAIR; locus:2037823; AT1G15480.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_019802_1_0_1; -.
DR InParanoid; Q9XI21; -.
DR OMA; HKQYELE; -.
DR OrthoDB; 494564at2759; -.
DR PhylomeDB; Q9XI21; -.
DR PRO; PR:Q9XI21; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9XI21; baseline and differential.
DR Genevisible; Q9XI21; AT.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF17177; PPR_long; 1.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 6.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..67
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 68..594
FT /note="Pentatricopeptide repeat-containing protein
FT At1g15480, mitochondrial"
FT /id="PRO_0000342785"
FT REPEAT 226..260
FT /note="PPR 1"
FT REPEAT 261..294
FT /note="PPR 2"
FT REPEAT 295..329
FT /note="PPR 3"
FT REPEAT 330..364
FT /note="PPR 4"
FT REPEAT 432..466
FT /note="PPR 5"
FT REPEAT 467..502
FT /note="PPR 6"
FT REPEAT 503..537
FT /note="PPR 7"
FT REGION 62..109
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 94..109
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 594 AA; 67532 MW; A615B5F0250EE497 CRC64;
MFALSKVLRR SQSLRLGACN AVYSKLDIPL GERNIAIESN ALIHDKHEAL PRFYELSWSS
STGRRSLSSD AGAKTTGDDD DLEDKNVDLA TPDETSSDSE DGEEFSGDEG DIEGAELELH
VPESKRPSEM FKAIVSVSGL SVGSALDKWV EQGKDTNRKE FESAMLQLRK RRMFGRALQM
TEWLDENKQF EMEERDYACR LDLISKVRGW YKGEAYIKTI PESFRGELVY RTLLANHVAT
SNVRTAEAVF NKMKDLGFPL STFTCNQMLI LYKRVDKKKI ADVLLLLEKE NLKPNLNTYK
ILIDTKGSSN DITGMEQIVE TMKSEGVELD LRARALIARH YASAGLKEKA EKVLKEMEGE
SLEENRHMCK DLLSVYGYLQ REDEVRRVWK ICEENPRYNE VLAAILAFGK IDKVKDAEAV
FEKVLKMSHR VSSNVYSVLL RVYVDHKMVS EGKDLVKQMS DSGCNIGALT WDAVIKLYVE
AGEVEKAESS LSKAIQSKQI KPLMSSFMYL MHEYVRRGDV HNTEKIFQRM KQAGYQSRFW
AYQTLIQAYV NAKAPAYGMK ERMKADNIFP NKRLAAQLAK ADPFKKTPLS DLLD
