PPR43_ARATH
ID PPR43_ARATH Reviewed; 540 AA.
AC Q9M9R6;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 25-MAY-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g14470;
GN Name=PCMP-A4; OrderedLocusNames=At1g14470; ORFNames=F14L17.25;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-A subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF43948.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC012188; AAF43948.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002684; AEE29168.1; -; Genomic_DNA.
DR PIR; E86279; E86279.
DR RefSeq; NP_172899.1; NM_101314.2.
DR AlphaFoldDB; Q9M9R6; -.
DR SMR; Q9M9R6; -.
DR PaxDb; Q9M9R6; -.
DR PRIDE; Q9M9R6; -.
DR EnsemblPlants; AT1G14470.1; AT1G14470.1; AT1G14470.
DR GeneID; 838009; -.
DR Gramene; AT1G14470.1; AT1G14470.1; AT1G14470.
DR KEGG; ath:AT1G14470; -.
DR Araport; AT1G14470; -.
DR TAIR; locus:2012517; AT1G14470.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_30_3_1; -.
DR InParanoid; Q9M9R6; -.
DR OMA; DMHAKCR; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9M9R6; -.
DR PRO; PR:Q9M9R6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9M9R6; baseline and differential.
DR Genevisible; Q9M9R6; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 2.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..540
FT /note="Pentatricopeptide repeat-containing protein
FT At1g14470"
FT /id="PRO_0000342784"
FT REPEAT 70..104
FT /note="PPR 1"
FT REPEAT 105..134
FT /note="PPR 2"
FT REPEAT 135..165
FT /note="PPR 3"
FT REPEAT 166..196
FT /note="PPR 4"
FT REPEAT 197..227
FT /note="PPR 5"
FT REPEAT 228..262
FT /note="PPR 6"
FT REPEAT 263..297
FT /note="PPR 7"
FT REPEAT 298..328
FT /note="PPR 8"
FT REPEAT 330..364
FT /note="PPR 9"
FT REPEAT 365..395
FT /note="PPR 10"
FT REPEAT 397..431
FT /note="PPR 11"
FT REPEAT 432..462
FT /note="PPR 12"
FT REPEAT 463..497
FT /note="PPR 13"
FT REPEAT 498..528
FT /note="PPR 14"
SQ SEQUENCE 540 AA; 61742 MW; A3BE875EE980F613 CRC64;
MSRELTVSLA AIASQALTFP QLNQIHAQLI VFNSLPRQSY WASRIISCCT RLRAPSYYTR
LIFDSVTFPN VFVVNSMFKY FSKMDMANDV LRLYEQRSRC GIMPDAFSFP VVIKSAGRFG
ILFQALVEKL GFFKDPYVRN VIMDMYVKHE SVESARKVFD QISQRKGSDW NVMISGYWKW
GNKEEACKLF DMMPENDVVS WTVMITGFAK VKDLENARKY FDRMPEKSVV SWNAMLSGYA
QNGFTEDALR LFNDMLRLGV RPNETTWVIV ISACSFRADP SLTRSLVKLI DEKRVRLNCF
VKTALLDMHA KCRDIQSARR IFNELGTQRN LVTWNAMISG YTRIGDMSSA RQLFDTMPKR
NVVSWNSLIA GYAHNGQAAL AIEFFEDMID YGDSKPDEVT MISVLSACGH MADLELGDCI
VDYIRKNQIK LNDSGYRSLI FMYARGGNLW EAKRVFDEMK ERDVVSYNTL FTAFAANGDG
VETLNLLSKM KDEGIEPDRV TYTSVLTACN RAGLLKEGQR IFKSIRNPLA DHYACMDLLR
