PPR42_ARATH
ID PPR42_ARATH Reviewed; 883 AA.
AC Q9LMH5;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 107.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g13800;
GN OrderedLocusNames=At1g13800; ORFNames=F16A14.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC068197; AAF79418.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29070.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59799.1; -; Genomic_DNA.
DR RefSeq; NP_001318997.1; NM_001332089.1.
DR RefSeq; NP_172835.1; NM_101248.2.
DR AlphaFoldDB; Q9LMH5; -.
DR SMR; Q9LMH5; -.
DR PaxDb; Q9LMH5; -.
DR PRIDE; Q9LMH5; -.
DR ProteomicsDB; 226290; -.
DR EnsemblPlants; AT1G13800.1; AT1G13800.1; AT1G13800.
DR EnsemblPlants; AT1G13800.2; AT1G13800.2; AT1G13800.
DR GeneID; 837941; -.
DR Gramene; AT1G13800.1; AT1G13800.1; AT1G13800.
DR Gramene; AT1G13800.2; AT1G13800.2; AT1G13800.
DR KEGG; ath:AT1G13800; -.
DR Araport; AT1G13800; -.
DR TAIR; locus:2014759; AT1G13800.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_9_1; -.
DR InParanoid; Q9LMH5; -.
DR OMA; YTIMINT; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LMH5; -.
DR PRO; PR:Q9LMH5; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LMH5; baseline and differential.
DR Genevisible; Q9LMH5; AT.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 5.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 17.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..883
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g13800"
FT /id="PRO_0000342783"
FT REPEAT 145..180
FT /note="PPR 1"
FT REPEAT 181..215
FT /note="PPR 2"
FT REPEAT 216..251
FT /note="PPR 3"
FT REPEAT 253..285
FT /note="PPR 4"
FT REPEAT 290..324
FT /note="PPR 5"
FT REPEAT 325..359
FT /note="PPR 6"
FT REPEAT 360..394
FT /note="PPR 7"
FT REPEAT 395..429
FT /note="PPR 8"
FT REPEAT 430..464
FT /note="PPR 9"
FT REPEAT 465..499
FT /note="PPR 10"
FT REPEAT 500..534
FT /note="PPR 11"
FT REPEAT 537..561
FT /note="PPR 12"
FT REPEAT 563..598
FT /note="PPR 13"
FT REPEAT 599..633
FT /note="PPR 14"
FT REPEAT 634..668
FT /note="PPR 15"
FT REPEAT 697..731
FT /note="PPR 16"
FT REPEAT 760..794
FT /note="PPR 17"
FT REPEAT 795..829
FT /note="PPR 18"
FT REPEAT 830..864
FT /note="PPR 19"
SQ SEQUENCE 883 AA; 100519 MW; 20857DED42CD1CC3 CRC64;
MRVFPIPLLS HVRGLIRQGP SSRFYVVPAL ARTNLTISHS EQVKEGTFDY KALELNDIGV
LRVLNSMKDD PYLALSFLKR IEGNVTLPSV QAYATVIRIV CGWGLDKKLD TFLFELVRRG
DEGRGFSVMD LLKAIGEMEQ SLVLLIRVST ALVKAYANLD MFDEAIDIFF RAYYSLGRAP
DIKALNFLIS RMIASGRSDM VVGFFWEIER LGLDADAHTY VLVVQALWRN DDKEELEKLL
SRLLISETRN PCVFYLNFIE GLCLNQMTDI AYFLLQPLRD ANILVDKSDL GIAYRKVVRG
LCYEMRIEDA ESVVLDMEKH GIDPDVYVYS AIIEGHRKNM NIPKAVDVFN KMLKKRKRIN
CVIVSSILQC YCQMGNFSEA YDLFKEFRET NISLDRVCYN VAFDALGKLG KVEEAIELFR
EMTGKGIAPD VINYTTLIGG CCLQGKCSDA FDLMIEMDGT GKTPDIVIYN VLAGGLATNG
LAQEAFETLK MMENRGVKPT YVTHNMVIEG LIDAGELDKA EAFYESLEHK SRENDASMVK
GFCAAGCLDH AFERFIRLEF PLPKSVYFTL FTSLCAEKDY ISKAQDLLDR MWKLGVEPEK
SMYGKLIGAW CRVNNVRKAR EFFEILVTKK IVPDLFTYTI MINTYCRLNE PKQAYALFED
MKRRDVKPDV VTYSVLLNSD PELDMKREME AFDVIPDVVY YTIMINRYCH LNDLKKVYAL
FKDMKRREIV PDVVTYTVLL KNKPERNLSR EMKAFDVKPD VFYYTVLIDW QCKIGDLGEA
KRIFDQMIES GVDPDAAPYT ALIACCCKMG YLKEAKMIFD RMIESGVKPD VVPYTALIAG
CCRNGFVLKA VKLVKEMLEK GIKPTKASLS AVHYAKLKAK GLR
