ID   PPR41_ARATH             Reviewed;         826 AA.
AC   Q9LMY5; F4HSJ0; F4HSJ1; Q9FZ67;
DT   01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT   16-NOV-2011, sequence version 3.
DT   03-AUG-2022, entry version 115.
DE   RecName: Full=Putative pentatricopeptide repeat-containing protein At1g13630;
GN   OrderedLocusNames=At1g13630; ORFNames=F132B4.10, F21F23.6;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130712; DOI=10.1038/35048500;
RA   Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA   Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA   Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA   Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA   Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA   Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA   Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA   Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA   Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA   Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA   Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA   Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA   Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA   Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA   Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT   "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL   Nature 408:816-820(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=1;
CC         Comment=A number of isoforms are produced. According to EST
CC         sequences.;
CC       Name=1;
CC         IsoId=Q9LMY5-1; Sequence=Displayed;
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAF81289.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=AAF99828.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC       Sequence=AEE29049.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AC027134; AAF99828.1; ALT_INIT; Genomic_DNA.
DR   EMBL; AC027656; AAF81289.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002684; AEE29049.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002684; AEE29050.2; -; Genomic_DNA.
DR   PIR; D86269; D86269.
DR   RefSeq; NP_001318994.1; NM_001332074.1. [Q9LMY5-1]
DR   RefSeq; NP_172820.4; NM_101233.4.
DR   AlphaFoldDB; Q9LMY5; -.
DR   SMR; Q9LMY5; -.
DR   BioGRID; 23164; 1.
DR   PaxDb; Q9LMY5; -.
DR   PRIDE; Q9LMY5; -.
DR   EnsemblPlants; AT1G13630.2; AT1G13630.2; AT1G13630. [Q9LMY5-1]
DR   GeneID; 837924; -.
DR   Gramene; AT1G13630.2; AT1G13630.2; AT1G13630. [Q9LMY5-1]
DR   KEGG; ath:AT1G13630; -.
DR   Araport; AT1G13630; -.
DR   TAIR; locus:2009997; AT1G13630.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_12_1; -.
DR   InParanoid; Q9LMY5; -.
DR   PRO; PR:Q9LMY5; -.
DR   Proteomes; UP000006548; Chromosome 1.
DR   ExpressionAtlas; Q9LMY5; baseline and differential.
DR   Genevisible; Q9LMY5; AT.
DR   Gene3D; 1.25.40.10; -; 6.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 2.
DR   Pfam; PF13041; PPR_2; 7.
DR   TIGRFAMs; TIGR00756; PPR; 13.
DR   PROSITE; PS51375; PPR; 17.
PE   3: Inferred from homology;
KW   Alternative splicing; Reference proteome; Repeat.
FT   CHAIN           1..826
FT                   /note="Putative pentatricopeptide repeat-containing protein
FT                   At1g13630"
FT                   /id="PRO_0000342782"
FT   REPEAT          228..262
FT                   /note="PPR 1"
FT   REPEAT          263..297
FT                   /note="PPR 2"
FT   REPEAT          298..332
FT                   /note="PPR 3"
FT   REPEAT          333..367
FT                   /note="PPR 4"
FT   REPEAT          368..402
FT                   /note="PPR 5"
FT   REPEAT          404..438
FT                   /note="PPR 6"
FT   REPEAT          439..473
FT                   /note="PPR 7"
FT   REPEAT          474..508
FT                   /note="PPR 8"
FT   REPEAT          509..543
FT                   /note="PPR 9"
FT   REPEAT          544..578
FT                   /note="PPR 10"
FT   REPEAT          579..613
FT                   /note="PPR 11"
FT   REPEAT          614..648
FT                   /note="PPR 12"
FT   REPEAT          661..695
FT                   /note="PPR 13"
FT   REPEAT          696..730
FT                   /note="PPR 14"
FT   REPEAT          731..765
FT                   /note="PPR 15"
FT   REPEAT          766..800
FT                   /note="PPR 16"
SQ   SEQUENCE   826 AA;  93634 MW;  B3C9F9581EB79D4E CRC64;
     MICRWIAFNS SKVSRSLSPF SSLLFTKSSF SVAKMDDESL PTTNSTSDHR GFYKEILFGM
     KKIGFREFLH GYHFRGLVSE LRHVHVEEIM DELMSESSDL SVWFFKELRD IYAFRHSSFS
     TLLVSHVLAG QRRFKELQVI LEQLLQEEGT LCELLSNSFR KWESTGLVWD MLLFLSSRLR
     MVDDSLYILK KMKDQNLNVS TQSYNSVLYH FRETDKMWDV YKEIKDKNEH TYSTVVDGLC
     RQQKLEDAVL FLRTSEWKDI GPSVVSFNSI MSGYCKLGFV DMAKSFFCTV LKCGLVPSVY
     SHNILINGLC LVGSIAEALE LASDMNKHGV EPDSVTYNIL AKGFHLLGMI SGAWEVIRDM
     LDKGLSPDVI TYTILLCGQC QLGNIDMGLV LLKDMLSRGF ELNSIIPCSV MLSGLCKTGR
     IDEALSLFNQ MKADGLSPDL VAYSIVIHGL CKLGKFDMAL WLYDEMCDKR ILPNSRTHGA
     LLLGLCQKGM LLEARSLLDS LISSGETLDI VLYNIVIDGY AKSGCIEEAL ELFKVVIETG
     ITPSVATFNS LIYGYCKTQN IAEARKILDV IKLYGLAPSV VSYTTLMDAY ANCGNTKSID
     ELRREMKAEG IPPTNVTYSV IFKGLCRGWK HENCNHVLRE RIFEKCKQGL RDMESEGIPP
     DQITYNTIIQ YLCRVKHLSG AFVFLEIMKS RNLDASSATY NILIDSLCVY GYIRKADSFI
     YSLQEQNVSL SKFAYTTLIK AHCVKGDPEM AVKLFHQLLH RGFNVSIRDY SAVINRLCRR
     HLVNESKFFF CLMLSQGISP DLDICEVMIK SDELLSWTIK WGLLPD