PPR40_ARATH
ID PPR40_ARATH Reviewed; 517 AA.
AC Q9SAD9;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g13040, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g13040; ORFNames=F3F19.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007357; AAD31057.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28962.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM61008.1; -; Genomic_DNA.
DR PIR; D86264; D86264.
DR RefSeq; NP_001323253.1; NM_001332059.1.
DR RefSeq; NP_172763.1; NM_101174.2.
DR AlphaFoldDB; Q9SAD9; -.
DR SMR; Q9SAD9; -.
DR STRING; 3702.AT1G13040.1; -.
DR PaxDb; Q9SAD9; -.
DR PRIDE; Q9SAD9; -.
DR EnsemblPlants; AT1G13040.1; AT1G13040.1; AT1G13040.
DR EnsemblPlants; AT1G13040.2; AT1G13040.2; AT1G13040.
DR GeneID; 837861; -.
DR Gramene; AT1G13040.1; AT1G13040.1; AT1G13040.
DR Gramene; AT1G13040.2; AT1G13040.2; AT1G13040.
DR KEGG; ath:AT1G13040; -.
DR Araport; AT1G13040; -.
DR TAIR; locus:2031825; AT1G13040.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9SAD9; -.
DR OMA; KVWDQMM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SAD9; -.
DR PRO; PR:Q9SAD9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SAD9; baseline and differential.
DR Genevisible; Q9SAD9; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..57
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 58..517
FT /note="Pentatricopeptide repeat-containing protein
FT At1g13040, mitochondrial"
FT /id="PRO_0000342781"
FT REPEAT 8..42
FT /note="PPR 1"
FT REPEAT 43..77
FT /note="PPR 2"
FT REPEAT 78..112
FT /note="PPR 3"
FT REPEAT 113..147
FT /note="PPR 4"
FT REPEAT 148..182
FT /note="PPR 5"
FT REPEAT 183..218
FT /note="PPR 6"
FT REPEAT 219..253
FT /note="PPR 7"
FT REPEAT 254..288
FT /note="PPR 8"
FT REPEAT 289..320
FT /note="PPR 9"
FT REPEAT 324..358
FT /note="PPR 10"
FT REPEAT 359..393
FT /note="PPR 11"
FT REPEAT 394..428
FT /note="PPR 12"
FT REPEAT 429..463
FT /note="PPR 13"
FT REPEAT 464..498
FT /note="PPR 14"
SQ SEQUENCE 517 AA; 58676 MW; 311CC216E90C9A3D CRC64;
MHQTLGAVRL AYRSRIANLV KSGMIDNAVQ VFDEMRHSSY RVFSFDYNRF IGVLVRESRF
ELAEAIYWDM KPMGFSLIPF TYSRFISGLC KVKKFDLIDA LLSDMETLGF IPDIWAFNVY
LDLLCRENKV GFAVQTFFCM VQRGREPDVV SYTILINGLF RAGKVTDAVE IWNAMIRSGV
SPDNKACAAL VVGLCHARKV DLAYEMVAEE IKSARVKLST VVYNALISGF CKAGRIEKAE
ALKSYMSKIG CEPDLVTYNV LLNYYYDNNM LKRAEGVMAE MVRSGIQLDA YSYNQLLKRH
CRVSHPDKCY NFMVKEMEPR GFCDVVSYST LIETFCRASN TRKAYRLFEE MRQKGMVMNV
VTYTSLIKAF LREGNSSVAK KLLDQMTELG LSPDRIFYTT ILDHLCKSGN VDKAYGVFND
MIEHEITPDA ISYNSLISGL CRSGRVTEAI KLFEDMKGKE CCPDELTFKF IIGGLIRGKK
LSAAYKVWDQ MMDKGFTLDR DVSDTLIKAS CSMSADA
