PPD5_ARATH
ID PPD5_ARATH Reviewed; 297 AA.
AC P82715; Q8VY65;
DT 13-NOV-2007, integrated into UniProtKB/Swiss-Prot.
DT 10-JUN-2008, sequence version 3.
DT 03-AUG-2022, entry version 104.
DE RecName: Full=PsbP domain-containing protein 5, chloroplastic;
DE AltName: Full=OEC23-like protein 6;
DE AltName: Full=PsbP-related thylakoid lumenal protein 4;
DE AltName: Full=Thylakoid lumenal 35.8 kDa protein;
DE Flags: Precursor;
GN Name=PPD5; OrderedLocusNames=At5g11450; ORFNames=F15N18.40;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1] {ECO:0000312|EMBL:CAB87705.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000269|PubMed:11130714};
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3] {ECO:0000312|EMBL:AAL62404.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia {ECO:0000269|PubMed:14593172};
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4] {ECO:0000305}
RP PROTEIN SEQUENCE OF 80-99, AND SUBCELLULAR LOCATION.
RC STRAIN=cv. Columbia {ECO:0000269|PubMed:11719511};
RX PubMed=11719511; DOI=10.1074/jbc.m108575200;
RA Schubert M., Petersson U.A., Haas B.J., Funk C., Schroeder W.P.,
RA Kieselbach T.;
RT "Proteome map of the chloroplast lumen of Arabidopsis thaliana.";
RL J. Biol. Chem. 277:8354-8365(2002).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17827269; DOI=10.1104/pp.107.105866;
RA Ishihara S., Takabayashi A., Ido K., Endo T., Ifuku K., Sato F.;
RT "Distinct functions for the two PsbP-like proteins PPL1 and PPL2 in the
RT chloroplast thylakoid lumen of Arabidopsis.";
RL Plant Physiol. 145:668-679(2007).
RN [6]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RX PubMed=18431481; DOI=10.1371/journal.pone.0001994;
RA Zybailov B., Rutschow H., Friso G., Rudella A., Emanuelsson O., Sun Q.,
RA van Wijk K.J.;
RT "Sorting signals, N-terminal modifications and abundance of the chloroplast
RT proteome.";
RL PLoS ONE 3:E1994-E1994(2008).
RN [7]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Columbia;
RX PubMed=22174848; DOI=10.1371/journal.pone.0028624;
RA Roose J.L., Frankel L.K., Bricker T.M.;
RT "Developmental defects in mutants of the PsbP domain protein 5 in
RT Arabidopsis thaliana.";
RL PLoS ONE 6:E28624-E28624(2011).
CC -!- FUNCTION: Involved in strigolactone biosynthesis.
CC {ECO:0000269|PubMed:22174848}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid lumen
CC {ECO:0000269|PubMed:11719511, ECO:0000269|PubMed:18431481}.
CC -!- DISRUPTION PHENOTYPE: Smaller plants and frequent morphological
CC defects, including increased lateral root branching, aerial rosettes
CC and multiple rosettes. No effect on photosystem II and linear
CC photosynthetic electron transfer. {ECO:0000269|PubMed:22174848}.
CC -!- SIMILARITY: Belongs to the psbP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB87705.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AL163815; CAB87705.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED91681.1; -; Genomic_DNA.
DR EMBL; AY072412; AAL62404.1; -; mRNA.
DR EMBL; AY114705; AAM48024.1; -; mRNA.
DR PIR; T48504; T48504.
DR RefSeq; NP_196706.2; NM_121183.5.
DR AlphaFoldDB; P82715; -.
DR SMR; P82715; -.
DR BioGRID; 16294; 4.
DR IntAct; P82715; 4.
DR STRING; 3702.AT5G11450.1; -.
DR PaxDb; P82715; -.
DR PRIDE; P82715; -.
DR ProteomicsDB; 249339; -.
DR EnsemblPlants; AT5G11450.1; AT5G11450.1; AT5G11450.
DR GeneID; 831016; -.
DR Gramene; AT5G11450.1; AT5G11450.1; AT5G11450.
DR KEGG; ath:AT5G11450; -.
DR Araport; AT5G11450; -.
DR TAIR; locus:2144236; AT5G11450.
DR eggNOG; ENOG502QTGE; Eukaryota.
DR HOGENOM; CLU_071423_0_0_1; -.
DR InParanoid; P82715; -.
DR PhylomeDB; P82715; -.
DR BioCyc; MetaCyc:AT5G11450-MON; -.
DR PRO; PR:P82715; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; P82715; baseline and differential.
DR Genevisible; P82715; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009543; C:chloroplast thylakoid lumen; IEA:UniProtKB-SubCell.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0019898; C:extrinsic component of membrane; IEA:InterPro.
DR GO; GO:0009654; C:photosystem II oxygen evolving complex; IEA:InterPro.
DR GO; GO:0005886; C:plasma membrane; HDA:TAIR.
DR GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR GO; GO:0031977; C:thylakoid lumen; HDA:TAIR.
DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro.
DR GO; GO:0015979; P:photosynthesis; IEA:InterPro.
DR InterPro; IPR016123; Mog1/PsbP_a/b/a-sand.
DR InterPro; IPR002683; PsbP_C.
DR Pfam; PF01789; PsbP; 1.
DR SUPFAM; SSF55724; SSF55724; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Direct protein sequencing; Plastid; Reference proteome;
KW Thylakoid; Transit peptide.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT TRANSIT ?..79
FT /note="Thylakoid"
FT /evidence="ECO:0000269|PubMed:11719511"
FT CHAIN 80..297
FT /note="PsbP domain-containing protein 5, chloroplastic"
FT /id="PRO_0000311681"
SQ SEQUENCE 297 AA; 33365 MW; 2DB521C129A840CC CRC64;
MALLCPSLPS PNSRLFRCRS SNISSKYHGA SKELMIARSG VSTRSISSEK GLSRRDLVLI
GLSSPLSMFL PLSSPVTHAE EDVKMSGEEL KMGTMVDDIN AYSYAYPLDY PSEKLVFKWV
ESRKPERYSS AAPLSPDARL RIVSERVDLT DNLVISISIG PPNSRLTSKE KKTWSAKEVA
DSVLSDKSAL RVTSSQRLEE SSVLDAHASD IDGEPYWYYE YLVRKSPTKI AEASKLYRHY
ISSTAERDGY LYTINASTLG KQWDKMGPVL ERAVGSFRLL PPTDSYVPPY KDPWRFW
