PP183_ARATH
ID PP183_ARATH Reviewed; 469 AA.
AC Q8S8Q7;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g34370, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-H25; Synonyms=PCMP-H62; OrderedLocusNames=At2g34370;
GN ORFNames=F13P17.21, T31E10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC004077; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AC004481; AAM14949.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC08965.1; -; Genomic_DNA.
DR EMBL; DQ056566; AAY78716.1; -; mRNA.
DR PIR; T02325; T02325.
DR RefSeq; NP_180984.1; NM_128989.2.
DR AlphaFoldDB; Q8S8Q7; -.
DR SMR; Q8S8Q7; -.
DR STRING; 3702.AT2G34370.1; -.
DR PaxDb; Q8S8Q7; -.
DR PRIDE; Q8S8Q7; -.
DR EnsemblPlants; AT2G34370.1; AT2G34370.1; AT2G34370.
DR GeneID; 818000; -.
DR Gramene; AT2G34370.1; AT2G34370.1; AT2G34370.
DR KEGG; ath:AT2G34370; -.
DR Araport; AT2G34370; -.
DR TAIR; locus:2040859; AT2G34370.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_1_1; -.
DR InParanoid; Q8S8Q7; -.
DR OMA; SVEMWET; -.
DR OrthoDB; 808695at2759; -.
DR PhylomeDB; Q8S8Q7; -.
DR PRO; PR:Q8S8Q7; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q8S8Q7; baseline and differential.
DR Genevisible; Q8S8Q7; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 1.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 3.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 5.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..65
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 66..469
FT /note="Pentatricopeptide repeat-containing protein
FT At2g34370, mitochondrial"
FT /id="PRO_0000356042"
FT REPEAT 142..172
FT /note="PPR 1"
FT REPEAT 173..207
FT /note="PPR 2"
FT REPEAT 208..238
FT /note="PPR 3"
FT REPEAT 244..274
FT /note="PPR 4"
FT REGION 375..469
FT /note="Type DYW motif"
SQ SEQUENCE 469 AA; 53856 MW; FB698FC9C0238437 CRC64;
MVRLVCSRIL KFPKPYLWSA TQTTSRCFNS RAQSHNLITK TITSSLQDVL TRPIWQNRSF
VQCRRVSSYA QMVNNHQSVT IETFDALCKQ VKIREALEVI DILEDKGYIV DFPRLLGLAK
LCGEVEALEE ARVVHDCITP LDARSYHTVI EMYSGCRSTD DALNVFNEMP KRNSETWGTM
IRCLAKNGEG ERAIDMFTRF IEEGNKPDKE IFKAVFFACV SIGDINEGLL HFESMYRDYG
MVLSMEDYVN VIEMLAACGH LDEALDFVER MTVEPSVEMW ETLMNLCWVQ GYLELGDRFA
ELIKKLDASR MSKESNAGLV AAKASDSAME KLKELRYCQM IRDDPKKRMH EFRAGDTSHL
GTVSAFRSLK VQMLDIGFVP ATRVCFVTVE EEEKEEQLLF RSNKLAFAHA IINSEARRPL
TVLQNMRTCI DGHNTFKMIS LITGRALIQR DKKKYHFYKN GVCSCKDYW
