PP170_ARATH
ID PP170_ARATH Reviewed; 615 AA.
AC Q680H3; Q9SLA5;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 95.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g25580;
GN Name=PCMP-H75; OrderedLocusNames=At2g25580; ORFNames=F3N11.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD31361.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006053; AAD31361.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002685; AEC07720.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM62263.1; -; Genomic_DNA.
DR EMBL; AK175894; BAD43657.1; -; mRNA.
DR PIR; B84650; B84650.
DR RefSeq; NP_001324433.1; NM_001336003.1.
DR RefSeq; NP_180129.2; NM_128116.3.
DR AlphaFoldDB; Q680H3; -.
DR SMR; Q680H3; -.
DR STRING; 3702.AT2G25580.1; -.
DR PaxDb; Q680H3; -.
DR PRIDE; Q680H3; -.
DR ProteomicsDB; 250500; -.
DR EnsemblPlants; AT2G25580.1; AT2G25580.1; AT2G25580.
DR EnsemblPlants; AT2G25580.2; AT2G25580.2; AT2G25580.
DR GeneID; 817097; -.
DR Gramene; AT2G25580.1; AT2G25580.1; AT2G25580.
DR Gramene; AT2G25580.2; AT2G25580.2; AT2G25580.
DR KEGG; ath:AT2G25580; -.
DR Araport; AT2G25580; -.
DR TAIR; locus:2040135; AT2G25580.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_45_0_1; -.
DR InParanoid; Q680H3; -.
DR OMA; PNEHRAD; -.
DR OrthoDB; 808695at2759; -.
DR PhylomeDB; Q680H3; -.
DR PRO; PR:Q680H3; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q680H3; baseline and differential.
DR Genevisible; Q680H3; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 2.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 4.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..615
FT /note="Pentatricopeptide repeat-containing protein
FT At2g25580"
FT /id="PRO_0000356029"
FT REPEAT 288..318
FT /note="PPR 1"
FT REPEAT 319..353
FT /note="PPR 2"
FT REPEAT 354..389
FT /note="PPR 3"
FT REPEAT 390..420
FT /note="PPR 4"
FT REGION 40..98
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 490..520
FT /note="Type E(+) motif"
FT REGION 521..615
FT /note="Type DYW motif"
FT CONFLICT 351
FT /note="N -> D (in Ref. 3; BAD43657)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 615 AA; 69906 MW; B951D5CC3737D6E1 CRC64;
MYTKLSLFPR KSSSLLSIAN EKRIHQFLRN LCTAVERLDF GNSNDSSEMN PREGYNGRIQ
NRTGSSGEVS ESIHTQSQSL GSNQGRNEQS WKQSPSLSNS QVQSQYQGNW YGTNSDYQNG
VGSSWHSGKT IDREVYDMIM EFDEYCIQEN VRVALTTMEK LEKKGYVMDF VRLLKLTQLC
REGNVYYEVS VLEEAKVSVL AKIRALVNNL EANYLKYYTD IMIEEYDAFC KHGKVKKALY
TIDILASMNY VVDLSRLLRL AKICGEAEGL QEAKTVHGKI SASVSHLDLS SNHVLLEMYS
NCGLANEAAS VFEKMSEKNL ETWCIIIRCF AKNGFGEDAI DMFSRFKEEG NIPDGQLFRG
IFYACGMLGD VDEGLLHFES MSRDYGIAPS IEDYVSLVEM YALPGFLDEA LEFVERMPME
PNVDVWETLM NLSRVHGNLE LGDYCAEVVE FLDPTRLNKQ SREGFIPVKA SDVEKESLKK
RSGILHGVKS SMQEFRAGDT NLPENDELFQ LLRNLKMHMV EVGYVAETRM ALHDIDQESK
ETLLLGHSER IAFARAVLNS APRKPFTVIK NLRVCVDCHN ALKIMSDIVG REVITRDIKR
FHQMKNGACT CKDYW
