MYB30_ORYSJ
ID MYB30_ORYSJ Reviewed; 258 AA.
AC Q6K1S6;
DT 07-JUN-2017, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 162.
DE RecName: Full=Transcription factor MYB30 {ECO:0000305};
DE Short=OsMYB30 {ECO:0000303|PubMed:18987217};
GN Name=MYB30 {ECO:0000303|PubMed:18987217};
GN OrderedLocusNames=Os02g0624300 {ECO:0000312|EMBL:BAS79847.1},
GN LOC_Os02g41510 {ECO:0000305};
GN ORFNames=B1215B07.15 {ECO:0000312|EMBL:BAD23776.1},
GN OsJ_07582 {ECO:0000312|EMBL:EAZ23866.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=18987217; DOI=10.1104/pp.108.128579;
RA Yilmaz A., Nishiyama M.Y., Fuentes B.G., Souza G.M., Janies D., Gray J.,
RA Grotewold E.;
RT "GRASSIUS: a platform for comparative regulatory genomics across the
RT grasses.";
RL Plant Physiol. 149:171-180(2009).
RN [7]
RP FUNCTION, INTERACTION WITH TIFY11A/JAZ9, SUBCELLULAR LOCATION, INDUCTION,
RP AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Zhonghua 11;
RX PubMed=28062835; DOI=10.1104/pp.16.01725;
RA Lv Y., Yang M., Hu D., Yang Z., Ma S., Li X., Xiong L.;
RT "The OsMYB30 transcription factor suppresses cold tolerance by interacting
RT with a JAZ protein and suppressing beta-amylase expression.";
RL Plant Physiol. 173:1475-1491(2017).
CC -!- FUNCTION: Acts as negative regulator of cold tolerance. Negatively
CC regulates beta-amylase genes at the transcriptional level in response
CC to cold stress. Suppresses beta-amylase gene expression by interacting
CC with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in
CC protecting cell membranes under cold stress conditions in rice and may
CC contribute to the cold tolerance as a compatible solute.
CC {ECO:0000269|PubMed:28062835}.
CC -!- SUBUNIT: Interacts with TIFY11A/JAZ9. {ECO:0000269|PubMed:28062835}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625,
CC ECO:0000269|PubMed:28062835}.
CC -!- INDUCTION: Induced by cold stress and flooding.
CC {ECO:0000269|PubMed:28062835}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions, but mutant plants exhibit increased tolerance to cold
CC stress. {ECO:0000269|PubMed:28062835}.
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DR EMBL; AP006523; BAD23776.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09388.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS79847.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ23866.1; -; Genomic_DNA.
DR EMBL; AK112056; BAG99528.1; -; mRNA.
DR RefSeq; XP_015623124.1; XM_015767638.1.
DR AlphaFoldDB; Q6K1S6; -.
DR SMR; Q6K1S6; -.
DR STRING; 4530.OS02T0624300-01; -.
DR PaxDb; Q6K1S6; -.
DR PRIDE; Q6K1S6; -.
DR EnsemblPlants; Os02t0624300-01; Os02t0624300-01; Os02g0624300.
DR GeneID; 4330027; -.
DR Gramene; Os02t0624300-01; Os02t0624300-01; Os02g0624300.
DR KEGG; osa:4330027; -.
DR eggNOG; KOG0048; Eukaryota.
DR HOGENOM; CLU_028567_6_4_1; -.
DR InParanoid; Q6K1S6; -.
DR OMA; NDDDMDF; -.
DR OrthoDB; 1499244at2759; -.
DR PlantReactome; R-OSA-8879007; Response to cold temperature.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd00167; SANT; 2.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR Pfam; PF00249; Myb_DNA-binding; 2.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51294; HTH_MYB; 2.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Stress response;
KW Transcription; Transcription regulation.
FT CHAIN 1..258
FT /note="Transcription factor MYB30"
FT /id="PRO_0000440329"
FT DOMAIN 9..61
FT /note="HTH myb-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DOMAIN 62..116
FT /note="HTH myb-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 37..61
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 89..112
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 211..234
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 258 AA; 28469 MW; 61FDBC1C586612EB CRC64;
MGRAPCCEKM GLKRGPWTAE EDRILVAHIE RHGHSNWRAL PRQAGLLRCG KSCRLRWINY
LRPDIKRGNF TREEEDAIIH LHDLLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLEPKP
SSGREAAAPK RKATKKAAAV AVAIDVPTTV PVSPEQSLST TTTSAATTEE YSYSMASSAD
HNTTDSFTSE EEFQIDDSFW SETLAMTVDS TDSGMEMSGG DPLGAGGASP SSSNDDDMDD
FWLKLFIQAG GMQNLPQI
