MDH_VIBMI
ID MDH_VIBMI Reviewed; 222 AA.
AC Q9L8F6; Q99PX6; Q9AIU1;
DT 07-JUN-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 90.
DE RecName: Full=Malate dehydrogenase;
DE EC=1.1.1.37;
DE Flags: Fragment;
GN Name=mdh;
OS Vibrio mimicus.
OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC Vibrio.
OX NCBI_TaxID=674;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=PT5;
RX PubMed=10678967; DOI=10.1128/iai.68.3.1507-1513.2000;
RA Boyd E.F., Moyer K.E., Shi L., Waldor M.K.;
RT "Infectious CTXPhi and the Vibrio pathogenicity island prophage in Vibrio
RT mimicus: evidence for recent horizontal transfer between V. mimicus and V.
RT cholerae.";
RL Infect. Immun. 68:1507-1513(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 19-222.
RC STRAIN=523-80, PT48, and PT5;
RX PubMed=10986258; DOI=10.1128/jb.182.19.5530-5538.2000;
RA Boyd E.F., Heilpern A.J., Waldor M.K.;
RT "Molecular analyses of a putative CTXphi precursor and evidence for
RT independent acquisition of distinct CTXphis by toxigenic Vibrio cholerae.";
RL J. Bacteriol. 182:5530-5538(2000).
CC -!- FUNCTION: Catalyzes the reversible oxidation of malate to oxaloacetate.
CC {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=(S)-malate + NAD(+) = H(+) + NADH + oxaloacetate;
CC Xref=Rhea:RHEA:21432, ChEBI:CHEBI:15378, ChEBI:CHEBI:15589,
CC ChEBI:CHEBI:16452, ChEBI:CHEBI:57540, ChEBI:CHEBI:57945; EC=1.1.1.37;
CC Evidence={ECO:0000255|PROSITE-ProRule:PRU10004};
CC -!- SUBUNIT: Homodimer. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the LDH/MDH superfamily. MDH type 1 family.
CC {ECO:0000305}.
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DR EMBL; AF207856; AAF40141.1; -; Genomic_DNA.
DR EMBL; AF238335; AAK15060.1; -; Genomic_DNA.
DR EMBL; AF238336; AAK15061.1; -; Genomic_DNA.
DR EMBL; AF238337; AAK15062.1; -; Genomic_DNA.
DR AlphaFoldDB; Q9L8F6; -.
DR SMR; Q9L8F6; -.
DR STRING; 674.VM_13250; -.
DR eggNOG; COG0039; Bacteria.
DR GO; GO:0030060; F:L-malate dehydrogenase activity; IEA:UniProtKB-EC.
DR GO; GO:0006108; P:malate metabolic process; IEA:InterPro.
DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW.
DR Gene3D; 3.90.110.10; -; 1.
DR InterPro; IPR022383; Lactate/malate_DH_C.
DR InterPro; IPR001236; Lactate/malate_DH_N.
DR InterPro; IPR015955; Lactate_DH/Glyco_Ohase_4_C.
DR InterPro; IPR001252; Malate_DH_AS.
DR InterPro; IPR010097; Malate_DH_type1.
DR InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR Pfam; PF02866; Ldh_1_C; 1.
DR Pfam; PF00056; Ldh_1_N; 1.
DR SUPFAM; SSF51735; SSF51735; 1.
DR SUPFAM; SSF56327; SSF56327; 1.
DR TIGRFAMs; TIGR01772; MDH_euk_gproteo; 1.
DR PROSITE; PS00068; MDH; 1.
PE 3: Inferred from homology;
KW NAD; Oxidoreductase; Tricarboxylic acid cycle.
FT CHAIN <1..>222
FT /note="Malate dehydrogenase"
FT /id="PRO_0000113331"
FT ACT_SITE 170
FT /note="Proton acceptor"
FT /evidence="ECO:0000250"
FT BINDING 1..6
FT /ligand="NAD(+)"
FT /ligand_id="ChEBI:CHEBI:57540"
FT /evidence="ECO:0000250"
FT BINDING 27
FT /ligand="NAD(+)"
FT /ligand_id="ChEBI:CHEBI:57540"
FT /evidence="ECO:0000250"
FT BINDING 74
FT /ligand="substrate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10004"
FT BINDING 80
FT /ligand="substrate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10004"
FT BINDING 87
FT /ligand="NAD(+)"
FT /ligand_id="ChEBI:CHEBI:57540"
FT /evidence="ECO:0000250"
FT BINDING 110..112
FT /ligand="NAD(+)"
FT /ligand_id="ChEBI:CHEBI:57540"
FT /evidence="ECO:0000250"
FT BINDING 112
FT /ligand="substrate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10004"
FT BINDING 146
FT /ligand="substrate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10004"
FT BINDING 220
FT /ligand="NAD(+)"
FT /ligand_id="ChEBI:CHEBI:57540"
FT /evidence="ECO:0000250"
FT VARIANT 194
FT /note="A -> V (in strain: 523-80)"
FT CONFLICT 211
FT /note="A -> R (in Ref. 2; AAK15060/AAK15061/AAK15062)"
FT /evidence="ECO:0000305"
FT CONFLICT 218
FT /note="F -> L (in Ref. 2; AAK15060/AAK15061/AAK15062)"
FT /evidence="ECO:0000305"
FT NON_TER 1
FT NON_TER 222
SQ SEQUENCE 222 AA; 22601 MW; 593BDCAFBEAE464A CRC64;
AAGGIGQALA LLLKNRLPAG SDLALYDIAP VTPGVAADLS HIPTPVTIKG YAGEDPTPAL
EGADVVLVSA GVARKPGMDR ADLFNVNAGI VKALAETIAV VCPKACVGII TNPVNTTVPI
AAEVLKKAGV YDKRKLFGVT TLDVIRSETF VAALKDKDPG QVRVPVIGGH SGVTILPLLS
QVEGVTFTDE EVAALTKRIQ NAGTEVVEAK AGGGSATFSM GQ