HNRDL_CHICK
ID HNRDL_CHICK Reviewed; 301 AA.
AC Q5ZI72;
DT 15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
DE Short=hnRNP D-like;
DE Short=hnRNP DL;
GN Name=HNRNPDL; Synonyms=HNRPDL; ORFNames=RCJMB04_29l7;
OS Gallus gallus (Chicken).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae;
OC Phasianinae; Gallus.
OX NCBI_TaxID=9031;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=CB; TISSUE=Bursa of Fabricius;
RX PubMed=15642098; DOI=10.1186/gb-2004-6-1-r6;
RA Caldwell R.B., Kierzek A.M., Arakawa H., Bezzubov Y., Zaim J., Fiedler P.,
RA Kutter S., Blagodatski A., Kostovska D., Koter M., Plachy J., Carninci P.,
RA Hayashizaki Y., Buerstedde J.-M.;
RT "Full-length cDNAs from chicken bursal lymphocytes to facilitate gene
RT function analysis.";
RL Genome Biol. 6:R6.1-R6.9(2005).
CC -!- FUNCTION: Acts as a transcriptional regulator. Binds DNA and RNA (By
CC similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:O14979}. Cytoplasm
CC {ECO:0000250|UniProtKB:O14979}. Note=Shuttles between the nucleus and
CC the cytoplasm in a TNPO1-dependent manner.
CC {ECO:0000250|UniProtKB:O14979}.
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DR EMBL; AJ720912; CAG32571.1; -; mRNA.
DR RefSeq; NP_001026313.1; NM_001031142.1.
DR RefSeq; XP_015131753.1; XM_015276267.1.
DR AlphaFoldDB; Q5ZI72; -.
DR SMR; Q5ZI72; -.
DR BioGRID; 683263; 1.
DR STRING; 9031.ENSGALP00000037222; -.
DR PaxDb; Q5ZI72; -.
DR Ensembl; ENSGALT00000038016; ENSGALP00000037222; ENSGALG00000023199.
DR Ensembl; ENSGALT00000047514; ENSGALP00000055771; ENSGALG00000023199.
DR Ensembl; ENSGALT00000068418; ENSGALP00000052960; ENSGALG00000023199.
DR GeneID; 422601; -.
DR KEGG; gga:422601; -.
DR CTD; 9987; -.
DR VEuPathDB; HostDB:geneid_422601; -.
DR eggNOG; KOG0118; Eukaryota.
DR GeneTree; ENSGT00940000154426; -.
DR HOGENOM; CLU_012062_1_1_1; -.
DR InParanoid; Q5ZI72; -.
DR OMA; RSFNDGF; -.
DR OrthoDB; 1565323at2759; -.
DR PhylomeDB; Q5ZI72; -.
DR PRO; PR:Q5ZI72; -.
DR Proteomes; UP000000539; Chromosome 4.
DR Bgee; ENSGALG00000023199; Expressed in ovary and 13 other tissues.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005654; C:nucleoplasm; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008143; F:poly(A) binding; IBA:GO_Central.
DR GO; GO:0034046; F:poly(G) binding; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR CDD; cd12758; RRM1_hnRPDL; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR034847; hnRPDL_RRM1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR Pfam; PF00076; RRM_1; 2.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; SSF54928; 2.
DR PROSITE; PS50102; RRM; 2.
PE 2: Evidence at transcript level;
KW Cytoplasm; DNA-binding; Methylation; Nucleus; Reference proteome; Repeat;
KW RNA-binding; Transcription; Transcription regulation.
FT CHAIN 1..301
FT /note="Heterogeneous nuclear ribonucleoprotein D-like"
FT /id="PRO_0000287242"
FT DOMAIN 30..112
FT /note="RRM 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT DOMAIN 115..194
FT /note="RRM 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT REGION 1..29
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 194..230
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 269..301
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 194..209
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 274..301
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 301 AA; 33444 MW; DAA3E50207FE26C0 CRC64;
MEDATEMSGG AEEFAEGSKI NASKNQQDDG KMFIGGLSWD TSKKDLTEYL SRFGEVVDCT
IKTDPVTGRS RGFGFVLFKD AASVEKVLEL KEHKLDGKLI DPKRAKALKG KEPPKKVFVG
GLSPDTSEEQ IKEYFGAFGE IENIELPMDT KTNERRGFCF ITYTDEEPVK KLLESRYHQI
GSGKCEIKVA QPKEVYRQQQ QQQKGGKSNA SGGRGGGRGR GRGQGQNWNQ GFNNYYDQGY
GNYNSAYSDQ SYSGYGGYDY SGYNYPNYGY GPGYTDYSGQ QSTYGKASRG GGNHQNNYQP
Y