HD3B_ORYSJ
ID HD3B_ORYSJ Reviewed; 760 AA.
AC Q9SNQ6; Q0DEN9;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Protein HEADING DATE 3B;
DE AltName: Full=ELF3-like protein 1 {ECO:0000303|PubMed:22422935};
DE Short=OsELF3-1 {ECO:0000303|PubMed:22422935};
DE AltName: Full=OsELF3 {ECO:0000303|PubMed:22888152};
DE AltName: Full=Protein HEADING DATE 17 {ECO:0000303|PubMed:22399582};
GN Name=HD3B;
GN Synonyms=EF7 {ECO:0000303|PubMed:22422935},
GN ELF3-1 {ECO:0000303|PubMed:22422935}, HD17 {ECO:0000303|PubMed:22399582};
GN OrderedLocusNames=Os06g0142600 {ECO:0000312|EMBL:BAS96101.1},
GN LOC_Os06g05060 {ECO:0000305};
GN ORFNames=OsJ_20086 {ECO:0000312|EMBL:EAZ35794.1},
GN P0535G04.25 {ECO:0000312|EMBL:BAA83571.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION.
RC STRAIN=cv. Nipponbare;
RX PubMed=22399582; DOI=10.1093/pcp/pcs028;
RA Matsubara K., Ogiso-Tanaka E., Hori K., Ebana K., Ando T., Yano M.;
RT "Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved
RT in rice photoperiodic flowering.";
RL Plant Cell Physiol. 53:709-716(2012).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Wuyunjing 8;
RA Zhao D., Liu Q.;
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP DISRUPTION PHENOTYPE.
RC STRAIN=cv. Gimbozu;
RX PubMed=19495721; DOI=10.1007/s00122-009-1078-2;
RA Yuan Q., Saito H., Okumoto Y., Inoue H., Nishida H., Tsukiyama T.,
RA Teraishi M., Tanisaka T.;
RT "Identification of a novel gene ef7 conferring an extremely long basic
RT vegetative growth phase in rice.";
RL Theor. Appl. Genet. 119:675-684(2009).
RN [8]
RP FUNCTION, TISSUE SPECIFICITY, INDUCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Gimbozu;
RX PubMed=22422935; DOI=10.1093/pcp/pcs029;
RA Saito H., Ogiso-Tanaka E., Okumoto Y., Yoshitake Y., Izumi H., Yokoo T.,
RA Matsubara K., Hori K., Yano M., Inoue H., Tanisaka T.;
RT "Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively
RT regulating the floral repressor gene Ghd7 under both short- and long-day
RT conditions.";
RL Plant Cell Physiol. 53:717-728(2012).
RN [9]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=22912900; DOI=10.1371/journal.pone.0043705;
RA Zhao J., Huang X., Ouyang X., Chen W., Du A., Zhu L., Wang S., Deng X.W.,
RA Li S.;
RT "OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice
RT circadian rhythm and photoperiodic flowering.";
RL PLoS ONE 7:E43705-E43705(2012).
RN [10]
RP FUNCTION, AND SUBCELLULAR LOCATION.
RX PubMed=22888152; DOI=10.1093/mp/sss062;
RA Yang Y., Peng Q., Chen G.X., Li X.H., Wu C.Y.;
RT "OsELF3 is involved in circadian clock regulation for promoting flowering
RT under long-day conditions in rice.";
RL Mol. Plant 6:202-215(2013).
CC -!- FUNCTION: Involved in the regulation of flowering time under short day
CC (SD) and long day (LD) conditions. Functions as floral promoter by
CC negatively regulating GHD7, a repressor of the photoperiodic control of
CC flowering (PubMed:22399582, PubMed:22422935, PubMed:22912900). Acts as
CC floral activator in the LD photoperiodic pathway (PubMed:22888152).
CC Involved in blue light-induced activation of EHD1 expression to promote
CC flowering under SD conditions (PubMed:22912900).
CC {ECO:0000269|PubMed:22399582, ECO:0000269|PubMed:22422935,
CC ECO:0000269|PubMed:22888152, ECO:0000269|PubMed:22912900}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:22888152}.
CC -!- TISSUE SPECIFICITY: Expressed in mesophyll cells of young leaves,
CC anthers, stigmas and the top of lemmas. {ECO:0000269|PubMed:22422935}.
CC -!- INDUCTION: Circadian-regulation under short day (SD) conditions.
CC Expression increases after midnight, peaks just at dawn and gradually
CC decreases during the daytime. {ECO:0000269|PubMed:22422935}.
CC -!- DISRUPTION PHENOTYPE: Late flowering phenotype under short day (SD) and
CC long day (LD) conditions. {ECO:0000269|PubMed:19495721,
CC ECO:0000269|PubMed:22422935, ECO:0000269|PubMed:22912900}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF18684.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB683966; BAL63007.1; -; Genomic_DNA.
DR EMBL; KC204686; AGW16338.1; -; Genomic_DNA.
DR EMBL; AP000399; BAA83571.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18684.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014962; BAS96101.1; -; Genomic_DNA.
DR EMBL; CM000143; EAZ35794.1; -; Genomic_DNA.
DR RefSeq; XP_015642489.1; XM_015787003.1.
DR AlphaFoldDB; Q9SNQ6; -.
DR STRING; 4530.OS06T0142600-01; -.
DR PaxDb; Q9SNQ6; -.
DR PRIDE; Q9SNQ6; -.
DR EnsemblPlants; Os06t0142600-01; Os06t0142600-01; Os06g0142600.
DR GeneID; 4340087; -.
DR Gramene; Os06t0142600-01; Os06t0142600-01; Os06g0142600.
DR KEGG; osa:4340087; -.
DR eggNOG; ENOG502QSB6; Eukaryota.
DR HOGENOM; CLU_027835_2_0_1; -.
DR InParanoid; Q9SNQ6; -.
DR OrthoDB; 245514at2759; -.
DR PlantReactome; R-OSA-8933811; Circadian rhythm.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0048578; P:positive regulation of long-day photoperiodism, flowering; IMP:UniProtKB.
DR GO; GO:0048576; P:positive regulation of short-day photoperiodism, flowering; IMP:UniProtKB.
DR InterPro; IPR039319; ELF3-like.
DR PANTHER; PTHR34281; PTHR34281; 1.
PE 2: Evidence at transcript level;
KW Flowering; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..760
FT /note="Protein HEADING DATE 3B"
FT /id="PRO_0000437428"
FT REGION 1..120
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 144..169
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 236..262
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 285..346
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 485..543
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 707..760
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 349..355
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT COMPBIAS 73..109
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 236..253
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 295..336
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 487..543
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 707..747
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 760 AA; 82379 MW; 253BF51F93D35670 CRC64;
MATRGGGGGG GGKEAKGKVM GPLFPRLHVN DAAKGGGPRA PPRNKMALYE QFTVPSHRFS
GGGGGGGVGG SPAHSTSAAS QSQSQSQVYG RDSSLFQPFN VPSNRPGHST EKINSDKINK
KISGSRKELG MLSSQTKGMD IYASRSTAEA PQRRAENTIK SSSGKRLADD DEFMVPSVFN
SRFPQYSTQE NAGVQDQSTP LVAANPHKSP STVSKSSTKC YNTVSKKLER IHVSDVKSRT
PLKDKEMEAA QTSKNVEVEK SSSFHASKDM FESRHAKVYP KMDKTGIIND SDEPHGGNSG
HQATSRNGGS MKFQNPPMRR NEISSNPSSE NTDRHYNLPQ GGIEETGTKR KRLLEQHDAE
KSDDVSRLLE QHDAENIDDV SDSSVECITG WEISPDKIVG AIGTKHFWKA RRAIMNQQRV
FAVQVFELHK LVKVQKLIAA SPHVLIESDP CLGNALLGSK NKLVEENLKA QPLLVATIDD
VEPSLQQPEV SKENTEDSPP SPHDTGLGSG QRDQAATNGV SKSNRRATPV ASDNKQNNWG
VQLQPPQNQW LVPVMSPLEG LVYKPYSGPC PPAGSILAPF YANCTPLSLP STAGDFMNSA
YGVPMPHQPQ HMGAPGPPSM PMNYFPPFSI PVMNPTAPAP VVEQGRHPSM PQPYGNFEQQ
SWISCNMSHP SGIWRFHASR DSEAQASSAS SPFDRFQCSG SGPVSAFPTV SAQNNQPQPS
YSSRDNQTNV IKVVPHNSRT ASESAARIFR SIQMERQRDD
