GIF1_ORYSJ
ID GIF1_ORYSJ Reviewed; 227 AA.
AC Q6AVI1;
DT 07-NOV-2018, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=GRF-interacting factor 1 {ECO:0000303|PubMed:27107174};
DE Short=OsGIF1 {ECO:0000303|PubMed:27107174};
DE AltName: Full=Protein ANGUSTIFOLIA 3 homolog {ECO:0000303|PubMed:29567670};
DE AltName: Full=Protein MAKIBA 3 {ECO:0000303|PubMed:29567670};
GN Name=GIF1 {ECO:0000303|PubMed:27107174};
GN Synonyms=AN3 {ECO:0000303|PubMed:29567670},
GN MKB3 {ECO:0000303|PubMed:29567670};
GN OrderedLocusNames=Os03g0733600 {ECO:0000312|EMBL:BAF13088.1},
GN LOC_Os03g52320 {ECO:0000312|EMBL:ABF98717.1};
GN ORFNames=OSJNBa0027J18.22 {ECO:0000312|EMBL:AAT78786.1},
GN OSJNBa0079G12.3 {ECO:0000312|EMBL:AAT77876.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Taichung 65;
RX PubMed=29567670; DOI=10.1242/dev.159624;
RA Shimano S., Hibara K.I., Furuya T., Arimura S.I., Tsukaya H., Itoh J.I.;
RT "Conserved functional control, but distinct regulation, of cell
RT proliferation in rice and Arabidopsis leaves revealed by comparative
RT analysis of GRF-INTERACTING FACTOR 1 orthologs.";
RL Development 145:0-0(2018).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP FUNCTION, AND INTERACTION WITH GRF4.
RX PubMed=27107174; DOI=10.1111/pbi.12569;
RA Li S., Gao F., Xie K., Zeng X., Cao Y., Zeng J., He Z., Ren Y., Li W.,
RA Deng Q., Wang S., Zheng A., Zhu J., Liu H., Wang L., Li P.;
RT "The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and
RT yield in rice.";
RL Plant Biotechnol. J. 14:2134-2146(2016).
RN [9]
RP FUNCTION, SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
RX PubMed=29051769; DOI=10.3389/fpls.2017.01730;
RA He Z., Zeng J., Ren Y., Chen D., Li W., Gao F., Cao Y., Luo T., Yuan G.,
RA Wu X., Liang Y., Deng Q., Wang S., Zheng A., Zhu J., Liu H., Wang L.,
RA Li P., Li S.;
RT "OsGIF1 positively regulates the sizes of stems, leaves, and grains in
RT rice.";
RL Front. Plant Sci. 8:1730-1730(2017).
CC -!- FUNCTION: Transcription coactivator that plays a role in the regulation
CC of meristematic function in leaves, stems and inflorescences
CC (PubMed:29051769, PubMed:29567670). May regulate leaf size, length of
CC stem internodes, and seed size by promoting cell expansion
CC (PubMed:29051769) (Probable). Transcription coactivator that plays a
CC role in the regulation of grain size (PubMed:27107174, PubMed:29051769,
CC PubMed:29567670). Component of a network formed by the microRNA396
CC (miRNA396), the GRFs and their interacting factors (GIFs) acting in the
CC regulation of meristem function, at least partially through the control
CC of cell proliferation (Probable). Component of the miRNA396c-GRF4-GIF1
CC regulatory module that plays an important role in grain size
CC determination (PubMed:27107174). {ECO:0000269|PubMed:27107174,
CC ECO:0000269|PubMed:29051769, ECO:0000269|PubMed:29567670,
CC ECO:0000305|PubMed:27107174, ECO:0000305|PubMed:29567670}.
CC -!- SUBUNIT: Interacts with GRF4. {ECO:0000269|PubMed:27107174}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:29051769}. Cytoplasm
CC {ECO:0000269|PubMed:29051769}. Note=Localizes predominantly in the
CC nucleus. {ECO:0000269|PubMed:29051769}.
CC -!- TISSUE SPECIFICITY: Highly expressed in internodes, nodes, developing
CC spikelets and developing anthers (PubMed:29051769). Expressed at low
CC levels in roots and mature glumes (PubMed:29051769).
CC {ECO:0000269|PubMed:29051769}.
CC -!- DISRUPTION PHENOTYPE: Reduced plant height, and short and narrow
CC leaves. {ECO:0000269|PubMed:29567670}.
CC -!- MISCELLANEOUS: Plants over-expressing GIF1 exhibit increased size of
CC multiple organs, such as leaves, stems, panicles and grains.
CC {ECO:0000269|PubMed:29051769, ECO:0000269|PubMed:29567670}.
CC -!- MISCELLANEOUS: 'Makiba' means 'pasture land' in Japanese.
CC {ECO:0000305|PubMed:29567670}.
CC -!- SIMILARITY: Belongs to the SS18 family. {ECO:0000305}.
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DR EMBL; BR001474; FAA01258.1; -; mRNA.
DR EMBL; AC103550; AAT77876.1; -; Genomic_DNA.
DR EMBL; AC096689; AAT78786.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF98717.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF13088.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS86238.1; -; Genomic_DNA.
DR EMBL; AK058575; BAG86739.1; -; mRNA.
DR RefSeq; XP_015629684.1; XM_015774198.1.
DR AlphaFoldDB; Q6AVI1; -.
DR SMR; Q6AVI1; -.
DR STRING; 4530.OS03T0733600-01; -.
DR PaxDb; Q6AVI1; -.
DR PRIDE; Q6AVI1; -.
DR EnsemblPlants; Os03t0733600-01; Os03t0733600-01; Os03g0733600.
DR GeneID; 4334010; -.
DR Gramene; Os03t0733600-01; Os03t0733600-01; Os03g0733600.
DR KEGG; osa:4334010; -.
DR eggNOG; KOG3227; Eukaryota.
DR HOGENOM; CLU_086253_0_0_1; -.
DR InParanoid; Q6AVI1; -.
DR OMA; MYAQPAL; -.
DR OrthoDB; 1495963at2759; -.
DR PlantReactome; R-OSA-9035605; Regulation of seed size.
DR PlantReactome; R-OSA-9608575; Reproductive meristem phase change.
DR PlantReactome; R-OSA-9627657; Regulation of leaf development.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003713; F:transcription coactivator activity; IEA:InterPro.
DR GO; GO:0008283; P:cell population proliferation; IBA:GO_Central.
DR GO; GO:0048366; P:leaf development; IMP:UniProtKB.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:UniProtKB.
DR GO; GO:0048316; P:seed development; IMP:UniProtKB.
DR InterPro; IPR044779; SS18.
DR InterPro; IPR007726; SS18_N.
DR PANTHER; PTHR23107; PTHR23107; 1.
DR Pfam; PF05030; SSXT; 1.
PE 1: Evidence at protein level;
KW Activator; Cytoplasm; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..227
FT /note="GRF-interacting factor 1"
FT /id="PRO_0000445646"
FT REGION 124..160
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 188..227
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 124..157
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 227 AA; 23525 MW; 3BCA3ECFD9F90833 CRC64;
MQQQHLMQMN QGMMGGYASP TTVTTDLIQQ YLDENKQLIL AILDNQNNGK VEECARNQAK
LQHNLMYLAA IADSQPPQTA AMSQYPSNLM MQSGARYMPQ QSAQMMAPQS LMAARSSMMY
AQPALSPLQQ QQQQQAAAAH GQLGMGSGGT TSGFSILHGE ASMGGGGGGG GAGNSMMNAG
VFSDFGRGGG GGGKEGSTSL SVDVRGANSG AQSGDGEYLK GTEEEGS
