FBL16_ARATH
ID FBL16_ARATH Reviewed; 522 AA.
AC Q9SN10;
DT 23-JAN-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=F-box/LRR-repeat protein 16;
GN Name=FBL16; OrderedLocusNames=At3g50080; ORFNames=F3A4.160;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=11077244; DOI=10.1016/s1360-1385(00)01769-6;
RA Xiao W., Jang J.-C.;
RT "F-box proteins in Arabidopsis.";
RL Trends Plant Sci. 5:454-457(2000).
CC -!- SEQUENCE CAUTION:
CC Sequence=BX822976; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AL132978; CAB62116.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78624.1; -; Genomic_DNA.
DR EMBL; BX822976; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T45861; T45861.
DR RefSeq; NP_566928.1; NM_114868.4.
DR AlphaFoldDB; Q9SN10; -.
DR SMR; Q9SN10; -.
DR BioGRID; 9488; 1.
DR STRING; 3702.AT3G50080.1; -.
DR iPTMnet; Q9SN10; -.
DR PaxDb; Q9SN10; -.
DR PRIDE; Q9SN10; -.
DR ProteomicsDB; 222499; -.
DR EnsemblPlants; AT3G50080.1; AT3G50080.1; AT3G50080.
DR GeneID; 824170; -.
DR Gramene; AT3G50080.1; AT3G50080.1; AT3G50080.
DR KEGG; ath:AT3G50080; -.
DR Araport; AT3G50080; -.
DR TAIR; locus:2083143; AT3G50080.
DR eggNOG; KOG1947; Eukaryota.
DR HOGENOM; CLU_016072_4_0_1; -.
DR InParanoid; Q9SN10; -.
DR OMA; FLDCESI; -.
DR OrthoDB; 1046098at2759; -.
DR PhylomeDB; Q9SN10; -.
DR PRO; PR:Q9SN10; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SN10; baseline and differential.
DR Genevisible; Q9SN10; AT.
DR GO; GO:0005737; C:cytoplasm; IDA:TAIR.
DR GO; GO:0019005; C:SCF ubiquitin ligase complex; IBA:GO_Central.
DR GO; GO:0004842; F:ubiquitin-protein transferase activity; ISS:TAIR.
DR GO; GO:0031146; P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006553; Leu-rich_rpt_Cys-con_subtyp.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR SMART; SM00256; FBOX; 1.
DR SMART; SM00367; LRR_CC; 6.
DR SUPFAM; SSF81383; SSF81383; 1.
PE 2: Evidence at transcript level;
KW Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..522
FT /note="F-box/LRR-repeat protein 16"
FT /id="PRO_0000272256"
FT DOMAIN 38..84
FT /note="F-box"
FT REPEAT 115..140
FT /note="LRR 1"
FT REPEAT 141..166
FT /note="LRR 2"
FT REPEAT 169..191
FT /note="LRR 3"
FT REPEAT 266..290
FT /note="LRR 4"
FT REPEAT 291..316
FT /note="LRR 5"
FT REPEAT 319..344
FT /note="LRR 6"
FT REPEAT 348..369
FT /note="LRR 7"
FT REPEAT 370..393
FT /note="LRR 8"
FT REPEAT 395..420
FT /note="LRR 9"
FT REPEAT 421..447
FT /note="LRR 10"
FT CONFLICT 166
FT /note="S -> F (in Ref. 3; BX822976)"
FT /evidence="ECO:0000305"
FT CONFLICT 352
FT /note="L -> F (in Ref. 3; BX822976)"
FT /evidence="ECO:0000305"
FT CONFLICT 481
FT /note="G -> E (in Ref. 3; BX822976)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 522 AA; 57249 MW; CE3EF8F9B655CE05 CRC64;
MGQAPSSPAE PNVRDTSLCL WSPEFLDCES IGFEDGDYDF TANLPDDCLA HIFQFLSAGD
RKRCSLVSKR WLLVDGQNRH RLSLDAKSEI LPFLPCIFNR FDSVTKLALR CDRRSFSLSD
EALFIVSIRC SNLIRVKLRG CREITDLGME SFARNCKSLR KLSCGSCTFG AKGINAMLEH
CKVLEELSLK RIRGLHELAE PIKLSLSASL RSVFLKELVN GQVFGSLVAT RTLKKVKIIR
CLGNWDRVFE MNGNGNSSLT EIRLERLQVT DIGLFGISKC SNLETLHIVK TPDCSNLGLA
SVVERCKLLR KLHIDGWRVK RIGDQGLMSV AKHCLNLQEL VLIGVDATYM SLSAIASNCK
KLERLALCGS GTIGDAEIGC IAEKCVTLRK FCIKGCLISD VGVQALALGC PKLVKLKVKK
CSLVTGEVRE WLRERRMTLV VSMDDDETNG VGLVDGGDQR VLETVVEEEA PPVIDGDGGL
GVAGGGRLGL AILKTKLGLL AGRNLVACTL RRWSQSEATS SI
